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I noticed that the taxon_suggest endpoint does not return the E. coli species (taxid:562), only some strains of the species.
https://api.ncbi.nlm.nih.gov/datasets/v2alpha/taxonomy/taxon_suggest/Esc…
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W odpowiedzi na wasze sugestie, dodaliśmy dwa nowe pola w odpowiedzi dla [GET /me](https://developer.allegro.pl/documentation/#operation/meGET):
- email,
- NIP (‘company.taxId’).
Za pomocą [GET /…
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Hi,
I am trying to add genome of interest into my kraken database. The genome is not available on NCBI and I have downloaded it from somewhere else. The tax IDs for the genome are present in both nod…
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I was wondering if it is possible to get a file with only the reads that has been assigned to a particular species in the output. Or, at least, a list of the especific reads that has been assigned to …
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### Operating System
macOS
### Other Linux
_No response_
### Workflow Version
v1.1.2
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
_No response_
### EPI2ME Versi…
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```shell
linkml-lint src/mixs/schema/mixs.yaml | grep "standard_naming" | grep -v "Permissible value"
```
> warning Slot has name 'HACCP_term' (standard_naming)
> warning Slot has name 'I…
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Hello,
I have encountered a problem, in the process of writing sample_file, the taxid of some species is not found in NCBI, I would like to ask whether the taxid in sample_file is strict? What is th…
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For example, taxid 34146 appears in binning output and it corresponds to Closterium peracerosum-strigosum-littorale complex which is not a species. This should be removed as a part of the sequence dat…
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Hello,
I am having issues in creating a custom database and need some help in resolving the issue.
I found ``` https://github.com/DiltheyLab/MetaMaps/issues/5``` to be helpful and following that …