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Hi there,
Congratulations on your tool - I'm really excited about PenguiN as this could be an interesting alternative to explore. As such, I've set out to compare it our group's gold-standard for e…
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This describes the gathering of all the assemblies generated by Serratus into a single file.
TLDR: It's available at https://lovelywater2.s3.amazonaws.com/assembly/rdva/rdva_v0.2.fa.lz4
(updated 2…
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Hello,
I am trying to use megahit as part of a larger analysis pipeline, and have encountered a strange behavior. I produced a test set using the following steps:
1. Extracted a 1M genomic sequence …
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all the definitions for slots `{ctg,scaf}_[N|L]\d+` need checked. It looks like N50 and L50 need inverted, as does N90 and L90, etc
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It would be nice with some simple examples on how to generate the most basic input data: assembly + coverage
## Estimate the amount of data you need
(100%/target_abundance%) * average_genomesize *…
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Hi,
`cwltool 3.1.20230601100705`
For a workflow with `cwlVersion: 1.2` and some steps only executed conditionally via `when`, cwltool
successfully validates the workflow even if `InlineJavascri…
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Hi ! Co assembly is running, So I used the results of assembly and binning of each sample(I have done it before) to REFINEMENT.
And I see this, Does this mean that the results of A(MaxBin) and B(…
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Hi,
I am running maxbin2 for a metagenome assembly and created the coverage file (.tsv) using bowtie2.
I got permission denied error. pls look in to and suggest.
What is file directory and "sett…
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For example,
Simply changing
**a**cerates viridiflora (raf.) eaton
https://api.gbif.org/v1/species/match?name=acerates%20viridiflora%20(raf.)%20eaton
to
**A**cerates viridiflora (raf.) eaton…
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Hello,
I am trying to run Reago v.1.1 on a set of metagenomes. But the "filter_input" step aborts after identifying only two 16S reads ( I know there are lots more from using Emirge and from prelimina…