-
I am running nanopolish variant calling on chr22 of a NA12878 dataset. I generated small regions using the *make range script* and launched multiple nanopolish instances using *parallel* command. How…
-
Hi,
Is it possible to speedup eventalign computations by splitting the files and/or region windowing?
For example to speedup `nanopolish eventalign --reads all.fastq --bam all.bam --genome geno…
-
hi, I generated 2TB eventalign.txt using nanopolish as a result.
Since it's nonsense storing it, I gzipped it and when I tried to apply xpore dataprep for the compressed eventalign.txt.gz, it couldn'…
-
I am using nanopolish to call methylation. As far as I can tell `nanopolish index` indexes the entire contents of a fast5 folder and a single fastq file. So for multiple fastq file derived from the sa…
-
Hello,
I really appreciate this tool and it is very helpful and user friendly.
I have a question regarding the methy_to_bsseq() function.
Does this function use something similar to the Nanopoli…
-
Hi there,
Have just recently installed NanoMethViz. I am unsure what format is needed to be loaded for it to work? I have phased TSV files resulting from Nanopolish methylation calls --> Phased by n…
-
Hi, @hasindu2008
When I use f5c to eventalign RNA004 data, the system popped up this bug and crashed.
Here are a few screenshots.
Here is my code:
`for i in input; do`
`echo $i`
`mkdir -p…
-
Hello,
the Debian Med team is maintaining nanopolish for official Debian. The recently released Debian 10 was the last Debian release featuring Python2 since this programming language is EOL. If …
-
@rjansen1984 (and others) als je hier lijst met tools kunt opschrijven die we graag in Galaxy zouden willen zien?
- [x] Canu (conda: yes, [github repo](https://github.com/marbl/canu), [readthedoc…
-
I have an issue related to somewhat atypical usage of nanopolish.
I am running nanopolish to call variants on around 500 contigs with sequences from related gene families (obtained through target e…