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Hello,
I apologise if this is not the right location to make this type of enquiry. I am completing my master's in diagnostics genomics and I have some concerns and questions that I wanted to reach …
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Dear nanopore devs,
I'm having issues getting mini_assemble to run on human (HG001/NA12978) data. I've successfully ran it on smaller assemblies before, but a ~30x human genome seems to be causing …
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### Description of the bug
I am running into an issue with the --save_trimmed_fail setting when running the bacass pipeline. It indicates that 'false' is not a valid choice, but it also indicates tha…
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I have been trying to assemble a 10Mb genome with uncorrected nanopore data (3-4 chromosomes expected). We have a lot of data, is that the reason Flye fails at the end?
[2019-06-22 11:00:05] INFO: …
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Hi,
Thank you for providing TrEMOLO!
I got an error when running test data via singularity.
CHECKING R PACKAGES...
MAKE REPORT
Rscript -e "bookdown::render_book('index.Rmd', 'bookdown::gitbook'…
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Hello, I am trying to make a variant calling analysis with ONT data for Homo Sapiens. However, it is still running even though I started this analysis 6 days ago and it is still making examples. Could…
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This issue will collect all feedback submitted via the feedback form at the end of each tutorial
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Results have been [aggregated](https://nbviewer.jupyter.org/github/bebatut/galaxy-training-m…
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using fmalmeida/ngs-preprocess:v2.6
nextflow should identify sequencing platform and route preprocessing to nanopore/pacbio/illumina.
```
ERROR ~ Error executing process > 'SRA_FETCH:GET_FASTQ …
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Hi again. I am running now my own dataset.
This is my commnad:
./nextflow run ./MUFFIN -params-file MUFFIN_params.yml -profile local,singularity
this is my parameters file:
assembler : "metasp…
H1889 updated
1 month ago
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Hello,
I am using m6ANet to detect m6A modifications in RNA and recently swapped over to the new nanopore RNA004 chemistry/kit. Because of this, my pipeline uses ONT's new basecaller, dorado, and I…