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Hi,
I ran RaGOO, and 2,288,581,979 bp could be mapped to the reference, but 524,739,651 could not be aligned. How would it be possible to use the unmapped contigs and reassemble them?
Thank you in…
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failed running with a different format fasta doc while running the following line:
```
average_nucleotide_identity.py -i //genome -o //pyani_result -m ANIm -g -v --write_excel -l log.txt -f
``…
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Hi,
I tried to find the core gene sweep by the test data using PopCOGenT, but I got an error when running phybreak1.generate_maf.py:
sh: 1: source: not found
12 genomes
Starting Nucmer: Tue Feb …
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Hi,
How do I run nucmer as multithread?
Also how do I get the a SAM output for the alignment?
Thanks,
Raz
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Hi professor
I am using nucmer for wheat genome compare with a 500GB RAM machine . but there is nothing output for 3 days .
Thanks
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Hi @mnshgl0110 and everyone :)
I'm sorry if this is a really obvious question, I'm new to programming and haven't used Syri before.
I am getting this error code when I try to run Syri:
"Runnin…
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Hi,
I installed dotploty and i am trying to run the examples provided.
But both the minimap2 and the nucmer example seem to have some issues.
[minimap2_failed_output.txt](https://github.com/tpoor…
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Hi,
I merged multiple nanopore contigs using illumina data but I have some ambiguous bases and Ns and some gaps in the final contig. I want to circularize this final contig with the original nanopore…
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When using the delta-filter function to extract the results, there is no output result after the program runs (running for a long time), and no error is reported, what may be the reason? My file size …
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I tried to run with two fly genomes, and after two days this software had not produced results. I am not sure how this program scales with genome size (or SNP density??). The multiple threads switch…