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Dear developers,
I am in the process of seeing if by adding phasing information I can increase the accuracy of my variants.
I have a Illumina haplotagged bam file which i phased with Nanopore dat…
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# Feature being added - Filtering!
Filter reads and alignments based on a flexible "mini language" specified in the TOML.
Would go into config TOML under the respective place for the filtering? I.e…
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THe github action for pipeline testing fails because of a problem with singularity:
https://github.com/bio-raum/FooDMe2/actions/runs/10285596571/job/28464249170?pr=47
```
Pulling Singularity imag…
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### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
wf-single-cell v2.0.2-ge9dac45
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No …
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Hello, I had a quite disparity in number of clonotypes assembled before and after accounting for read UMIs. I was wondering what might be the reason behind this phenomenon.
This is the assemble re…
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Hi @gbouras13,
I have a problem with the coverage info in output files. I have assembled many genomes sequenced with nanopore and I find coverage between 20 and 30 for all, even for those who have …
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Hi there,
I would like to use try this interesting software.
I tried to install it using anaconda. I followed the instructions on the github page but, after typing
>>h5c++ -03 -std=c++11 [...]…
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Hi,
I have been trying to manually select the cutoffs by running "hist_plot.py". As I understand, we are supposed to select cutoff values from the count-read_depth image and manually change the "cuto…
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Hi!
I am ghaving an error that I do not understand from deeplexicon.py. The output is empty.
Could you please let me know what's going on and how to solve this issue?
Thank you!
```
[...]
F…
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hi, I recently installed funannotate software, and an error was reported during testing.
(funannotate) [liuyuanchao@login ~]$ funannotate check --show-versions
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