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Hi, I am going to **de novo** genome by runBNG, and I have downloaded [**BioNano tools**](http://www.bnxinstall.com/RefAlignerAssembler/Linux/AVX/) (v5122). There are only two files within the tools f…
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Dear Chengxi Ye,
First of all, thank you for this very efficient assembler. I would like to know how DBG2OLC deals with heterozygosity. I'll tell you my specific case. I have a quite heterozygotic ge…
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An error encountered in a large whole-genome dataset with lots of iterations after 9 completed:
aTRAM iteration 10
Blasting query against shards: iteration 10
Traceback (most recent call last):
…
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Hi,
I am experiencing some issues when trying to run athena-meta, more specifically in the OLC assembly step.. This is the error code I get in the log file:
```
2018-02-01 12:59:19 - --starting…
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Hi,
Many thanks for developing this great assembler.
I have recently updated to version 2.0 version of ABruijn and testing it out on relatively complex nanopore metagenomics samples. The eukary…
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Hi,
I'm trying to apply racon to a genome assembly draft ~ 900 Mbp generated using minimap2 as an overlapper and miniasm as the de novo assembler. I then used minimap2 to map the fastq back to the …
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In the `# misassemblies` count in `misassemblies_report.txt`, I'd like to know how many of the `# relocations` occurred in scaffold gaps. In the `mis_contigs.info` report, it'd be helpful to report wh…
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This assembly software without genome-guide assembly model
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Hi,
I have recently been attempting to assemble a genome using HINGE, and due to some misunderstanding of how to best use this assembler, I have run through a pipeline using these commands:
```…
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This issue concerns use of the v1.6 release of Canu on a Slurm-configured cluster, with a cluster-wide operating system of CentOS 6.9.
Command used was:
```
canu \
-p someFish -d someF…