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Hello, software developer. I have three ONT datasets in total. The first two ran normally, but the third one encountered the following error. What could be the reason for this?
[24/07/2024 15:27:11…
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Hello Pavanvidem,
Could you update "intersectBed" to "bedtools intersect" at https://github.com/pavanvidem/chira/blob/e5c07574b032631f7d93eec9bc3333c311761ab8/chira_merge.py#L482C5-L482C114? Th…
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Request from an email: Would it be possible for [CRAM, CRAI](https://en.wikipedia.org/wiki/CRAM_(file_format)#:~:text=CRAM%20is%20a%20compressed%20columnar,Hsi%2DYang%20Fritz%20et%20al.&text=Open%20fo…
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### I installed the package with the following script:
cd /home/lcb
git clone https://github.com/oushujun/EDTA.git
mamba env create -f EDTA_2.2.x.yml
### The installation is as follows:
Name …
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Hey @jinyongyoo @zanglab,
I hope you are having a great day! I just wanted to start this off by saying thank you for creating and maintaining this awesome tool.
**Background**
I recently notic…
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Hi,
I am trying to run the isocircPlot script and am getting an error with bedtools and I am not really sure what to do in this situation. Do you think it has to do with the version of bedtools or …
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- [x] intersect
- [x] window
- [x] closest
- [x] coverage
- [ ] map
- [ ] genomecov
- [x] merge
- [x] cluster
- [x] complement
- [x] shift
- [x] subtract
- [x] slop
- [x] flank
- [x] sort…
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Hello,
Thank you for providing such a convenient tool!
I have installed Intervene via conda and tested with my own dataset `hap1.bed` and `hap2.bed` to generate a Venn diagram using command lin…
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There is a bug in the code that is preventing execution of the bedtools intersect command:
[Mon Aug 5 21:10:14 2024] checking formatting of GFFs in ome2gff.txt..
sh: -c: line 0: syntax error near…
drdna updated
1 month ago
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**Is your feature request related to a problem?**
Users may want to restrict primers to specific genomic loci.
**Describe the solution you'd like**
Use bedtools to keep primer pairs whose product…