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Hello developers,
Thank you for developing a nice benchmarking tool. How to generate reference genomes in json format for BinBencher assessment? I couldn't understand from the documentation…
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We tried running the SOAPdenovo_array.sh script using 30 .fq files of total size 557GB as input and a reference genome with a total size of approximately 17GB.
The SOAPdenovo_array.sh script requires…
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Hi Developer,
Thank you for developing this good tool.
Is it possible to use purge_dups to get the best set of contigs from two different assembler?
For example, I got draft genomes of the same org…
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Thank you for the great tool! I am using MEGAHIT+VIBRANT+COBRA to get about 35 high-quality phages from each of my metagenomes after validation by CheckV. I just tested the new overlap-based assembler…
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Good afternoon,
I am assembling fish genomes de novo using hifi data and have run into a few issues for a few of my target species (all diploid);
first, to better understand the size and heterozyg…
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### Description of bug
Hi everyone,
I encountered an error while using SPAdes-3.15.5 to assemble a diploid genome (~560 Mb) with 0.67% heterozygosity. About 124 GB of corrected reads were provideed…
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### Description of bug
Hi, I'm getting this error (SPAdes genome assembler v3.15.5)
![image](https://user-images.githubusercontent.com/118806130/224329866-05bff0aa-3666-4ab4-bd59-a5d08f62683e.png)
…
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Hi, I'm using Jellyfish+Genomescope on pair-end NGS data. It seems like that Genomescope complains about failing to converge and the result seems not correct. I have tried changing kmer from 21 to 19,…
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Hi there,
We are using hifi-asm to assemble human genome sequenced on Pacbio Revio machine, the coverage of the sample is roughly 30X (may be lower though), we found that hifi-asm might miss one ha…
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Details:
http://permalink.gmane.org/gmane.science.biology.ray-genome-assembler/735