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A new way of exploring immunity: linking highly multiplexed antigen recognition to immune repertoire and phenotype
[report](https://pages.10xgenomics.com/rs/446-PBO-704/images/10x_AN047_IP_A_New_Way_…
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- [ ] Review by BS
- [x] Tessa etc output in multimodal integration way way too verbose. Silence it
- [ ] Update https://www.sc-best-practices.org/air_repertoire/ir_profiling.html#immune-receptor-se…
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[CDR3序列.xlsx](https://github.com/liulab-dfci/TRUST4/files/13934536/CDR3.xlsx)
Thanks to the developers of the tool for facilitating us to analyze the immune repertoire data. I used the trust-smarts…
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_Originally posted by @schristley in https://github.com/airr-community/airr-standards/pull/294#issuecomment-571331941_
> I've been thinking a bit about `DataProcessing`, specifically how we might g…
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Another form of sequence analysis is doing immune repertoire sequencing of the [VDJ recombination](https://en.wikipedia.org/wiki/V(D)J_recombination) locus in B and T cells.
For captured/enriched …
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Hi,
Recently, I have read your article "Concerted expansion and contraction of immune receptor gene repertoires in plant
genomes" in Nature Plant. It's really a brilliant research!
I noticed …
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I would like to ask how Trust4 can directly analyze paired-end .fastq format data from the 10X Genomics platform for single-cell analysis, instead of analyzing BAM format data. Can you provide support…
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Hi! I am following the tutorial for annotating clonotypes using immune receptor databases, and I had a few questions.
First, if I'm only working with data for one sample, am I able to annotate the …
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- [ ] What types of knowledge and/or algorithms do we want to compute?
- [ ] specificity prediction algorithms
- [ ] gather comprehensive list of existing tools
- [ ] which algorithms will require cod…
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Hi,
I used the repload command to load TRUST4 data using "immdata