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**Describe the bug**
I was running a comparison of current long read assemblers and realised that NextDenovo has one of the best contiguities, however, it seems to trim a lot of the telomeres.
**G…
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Hi :)
I have used the following command:
`seqtk telo assembly.fa > telo.bed 2 > telo.count`
I instantly get two files: telo.bed (**empty**) and telo.count which shows me the following:
`more tel…
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Hi,
I have assembled the highly heterozygous and repetitive genome of a plant using HiFi and Omni-C, running hifiasm to generate a phased diploid assembly. I then processed the omni-c reads through…
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Hello, I have successfully completed all the example data runs now. However, I noticed that in the "telomere reads-assisted program" step, the default setting is "CCCCAA for Tetrahymena species." Does…
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Hello-
I am interested in deploying qmotif to quantify telomeres however I have HG38 aligned bams, is it possible to just liftover the coordinates you provided in the configureration file to hg38 …
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Hi,
I wanted to run your telomere search pipeline, but I am not able to. I downloaded the github, and then tried running the telomere_analysis.sh, but i keep getting error that fasta file is not fo…
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I am writing to seek guidance regarding the quantification of telomeres using qmotif. Despite successfully deploying qmotif for telomere quantification with an HG38-aligned BAM file and obtaining the…
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Dear developer,
If I want to add telomere points on chromosomes rectangle in karyotype plot, what source code do I need to modify in jcvi.graphics? I have the position file of each telomere on both r…
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we ended up with 2 terms for "meiotic telomere tethering". I'm not sure how...we did this in detail a while back...
+ | meiotic attachment of telomere to nuclear envelope
+ | meiotic telomer…
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Hi,
Recently I used TelSeq to estimate telomere length from WGS sequencing data (NovaSeq), with k = 7 and r = 151. The returned length falls in the range of 0.4 - 0.5kb. However for a different batch…