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AlexsLemonade
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OpenPBTA-analysis
The analysis repository for the Open Pediatric Brain Tumor Atlas Project
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Re-run chromosomal instability with V22
#1460
sjspielman
closed
2 years ago
0
Table 1 double counts histologies
#1459
jashapiro
closed
2 years ago
4
V22 imm deconv rerun and figure updates
#1458
jharenza
closed
2 years ago
8
V22 chromothripsis figure update to use cancer group display
#1457
jharenza
closed
2 years ago
10
V22 rerun sample distribution figure
#1456
jharenza
closed
2 years ago
3
Updated approach to running analyses and figures
#1455
sjspielman
closed
2 years ago
7
Updated generate_figures.sh script
#1454
sjspielman
closed
2 years ago
1
V22 - update interaction plots with new cancer group display
#1453
jharenza
closed
2 years ago
4
V22 mut sigs - rerun scripts 07 and 08
#1452
jharenza
closed
2 years ago
8
Docs updates - data files and analysis README
#1451
jharenza
closed
2 years ago
1
v22 CI fixes
#1450
jaclyn-taroni
closed
2 years ago
0
V22 CI updates for `consensus_seg_with_status.tsv` (2/N release)
#1449
jharenza
closed
2 years ago
3
EDIT: V22 rerun all tables
#1448
jharenza
closed
2 years ago
5
V22 sample distribution analysis rerun (14/N)
#1447
jharenza
closed
2 years ago
1
V22 molecular subtyping integrate (13/N)
#1446
jharenza
closed
2 years ago
1
run v22 compile subtypes (12/N)
#1445
jharenza
closed
2 years ago
0
V22 LGG subtyping (11/N)
#1444
jharenza
closed
2 years ago
3
V22 hgg subtyping (10/N)
#1443
jharenza
closed
2 years ago
0
V22 neurocytoma subtyping (9/N)
#1442
jharenza
closed
2 years ago
0
v22 EWS subtyping (8/N)
#1441
jharenza
closed
2 years ago
0
V22 chordoma subtyping (7/N)
#1440
jharenza
closed
2 years ago
0
V22 embryonal subtyping (6/N)
#1439
jharenza
closed
2 years ago
0
Updated analysis: molecular subtyping EPN
#1438
jharenza
closed
2 years ago
1
V22 epn subtyping (5/N)
#1437
jharenza
closed
2 years ago
10
V22 cranio subtyping (4/N)
#1436
jharenza
closed
2 years ago
2
V22 run MB subtyping (3/N)
#1435
jharenza
closed
2 years ago
3
V22 subtyping - chr instab (2/N)
#1434
jharenza
closed
2 years ago
0
V22 subtyping (1/N)
#1433
jharenza
closed
2 years ago
0
Generate script modified to include seg with status
#1432
runjin326
closed
2 years ago
0
Update data documentation
#1431
sjspielman
closed
2 years ago
0
Updated survival notebooks with LGG broad histology
#1430
sjspielman
closed
2 years ago
7
Update molecular-subtyping-HGG module README
#1429
sjspielman
closed
2 years ago
1
Add hotspots detection to docs
#1428
sjspielman
closed
2 years ago
0
Update docs/data-files-description.Rmd
#1427
sjspielman
closed
2 years ago
0
Plan: Road to v22
#1426
jaclyn-taroni
closed
2 years ago
8
Group R package installation to try to speed up build time
#1425
jaclyn-taroni
closed
2 years ago
3
v22-release (1/N release)
#1424
jharenza
closed
2 years ago
5
Docs changes related to #1399
#1423
jaclyn-taroni
closed
2 years ago
2
Revise shell script run for subtyping such that analysis file generation is removed
#1422
jaclyn-taroni
closed
2 years ago
0
Add shell script to generate analysis files that are included in data releases
#1421
jaclyn-taroni
closed
2 years ago
0
Update snv-callers to be able to be run from places besides the root of repo
#1420
jaclyn-taroni
closed
2 years ago
1
Update logic in modules where analysis files included in the data releases are generated
#1419
jaclyn-taroni
closed
2 years ago
3
Make sure MB subtyping uses data download
#1418
jaclyn-taroni
closed
2 years ago
5
Update Figure panel 4F
#1417
sjspielman
closed
2 years ago
1
Update LGG survival models
#1416
sjspielman
closed
2 years ago
1
Make sure non-ATRT/non-MB embryonal subtyping module uses data download
#1415
jaclyn-taroni
closed
2 years ago
0
Make sure HGG subtyping uses data download
#1414
jaclyn-taroni
closed
2 years ago
0
Make sure EWS subtyping uses data download
#1413
jaclyn-taroni
closed
2 years ago
0
Rerun changes added
#1412
runjin326
closed
2 years ago
7
Update figure S6 panel arrangement
#1411
sjspielman
closed
2 years ago
1
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