CDCgov ww-inference-model issues

CDCgov / ww-inference-model

An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations

https://cdcgov.github.io/ww-inference-model/

Apache License 2.0

16 stars 2 forks source link

issues

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Newest Most commented Recently updated Oldest Least commented Least recently updated

Windows error with initial compiling

#217 arranhamlet opened 1 hour ago
1
Forecast hospitalizations using only wastewater data

#216 scarpino opened 21 hours ago
4
Merge `main` into `spatial-main`

#215 kaitejohnson opened 1 day ago
0
Suppress stan warnings and print warning within `wwinference()` if convergence diagnostics fail?

#214 kaitejohnson opened 1 day ago
0
Windows workaround in `compile_model`

#213 kaitejohnson opened 1 day ago
1
Setup pkgdown so it hosts release and dev sites

#212 gvegayon closed 1 day ago
4
Constrain `dur_shedding` to be greater than `t_peak`

#211 dylanhmorris opened 1 week ago
0
Positive constrain `mode_sigma_ww_site`

#210 dylanhmorris closed 1 week ago
2
Deployment failure

#209 kaitejohnson opened 1 week ago
2
Fix error messaging when data extends beyond forecast date

#208 kaitejohnson closed 2 weeks ago
1
Update README.md

#207 kaitejohnson closed 2 weeks ago
1
Test rendering the vignette on mac and Windows in CI

#206 dylanhmorris opened 2 weeks ago
2
Update NEWS.md

#205 kaitejohnson closed 2 weeks ago
1
Add `R CMD check` on macOS to CI

#204 dylanhmorris opened 2 weeks ago
1
Edit description with release tag

#203 kaitejohnson closed 2 weeks ago
1
Fix error messaging if accidentally pass data beyond forecast date

#202 kaitejohnson closed 2 weeks ago
0
Hot fix warn if data exceeds forecast date

#201 kaitejohnson closed 2 weeks ago
2
Modify `plot` methods

#200 kaitejohnson opened 2 weeks ago
1
hot-fix initialization misspecifies parameter name for `error_rt_subpop`

#199 kaitejohnson closed 2 weeks ago
4
Alternative install of cmdstan using cmdstanr::*

#198 gvegayon closed 2 weeks ago
6
Rename `validate_both_datasets()` to `validate_data_jointly()`

#197 kaitejohnson opened 2 weeks ago
0
Make reference subpopulation configurable by the user

#196 kaitejohnson opened 2 weeks ago
0
`import` or qualify namespace for `desc` and `formalArgs`

#195 dylanhmorris opened 2 weeks ago
0
Improve error messaging for the various no wastewater cases

#194 kaitejohnson opened 2 weeks ago
0
Remove the snapshot test, fix a few other bugs

#193 dylanhmorris closed 2 weeks ago
0
Set up release and dev pkgdown sites

#192 kaitejohnson closed 1 day ago
5
Hot fix validate pmf

#191 kaitejohnson closed 2 weeks ago
1
add multiple os to matrix strategy

#190 kaitejohnson closed 2 weeks ago
11
Run `R CMD check` on Windows and macOS as well as Ubuntu in CI

#189 dylanhmorris closed 1 week ago
7
move `cmdstanr` to suggests

#188 gvegayon closed 2 weeks ago
5
Unable to find include files when running through the worked example

#187 arranhamlet opened 2 weeks ago
20
Meta v1.2 Scope out needs to submit package to cran

#186 kaitejohnson opened 2 weeks ago
1
Add subpopulation count data to model/ `generate_simulated_data()` function

#185 kaitejohnson opened 3 weeks ago
0
Add outputs to `generate_simulated_data()

#184 kaitejohnson opened 3 weeks ago
0
Only run post-page-artifact job on PRs

#183 dylanhmorris closed 3 weeks ago
1
Build link comment in PRs: update comment instead of re-creating on rebuilds

#182 dylanhmorris closed 3 weeks ago
2
Adding the post-page-artifact job

#181 gvegayon closed 3 weeks ago
4
Preview github-pages on PRs

#180 gvegayon closed 3 weeks ago
0
Fix formatting so functions link

#179 kaitejohnson closed 2 weeks ago
5
171 add links

#178 kaitejohnson closed 3 weeks ago
0
2024-09-19 update : adding spatial scenes.

#177 cbernalz opened 3 weeks ago
0
Fix low ESS warning messaging in CI

#176 kaitejohnson opened 3 weeks ago
0
174 cmdstanr sample args

#175 kaitejohnson closed 2 weeks ago
12
Most if not all of the arguments to `cmdstanr` `sample()` should be optionally configurable from the `wwinference()` interface

#174 dylanhmorris closed 2 weeks ago
1
Exploring scenarios for when IID inference model fails when compared to others

#173 cbernalz opened 4 weeks ago
0
Add plotting functions to spatial-main

#172 kaitejohnson opened 4 weeks ago
0
Add links to package functions in vignettes

#171 kaitejohnson opened 4 weeks ago
6
Tweaks to main vignette

#170 kaitejohnson closed 4 weeks ago
1
fix rendering to katex, add mathcal Rt to vignette

#169 kaitejohnson closed 4 weeks ago
1
Change how offsets are handled

#168 dylanhmorris closed 4 weeks ago
0