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CDCgov
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ww-inference-model
An in-development R package and a Bayesian hierarchical model jointly fitting multiple "local" wastewater data streams and "global" case count data to produce nowcasts and forecasts of both observations
https://cdcgov.github.io/ww-inference-model/
Apache License 2.0
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found spelling typo
#252
kaitejohnson
opened
1 week ago
1
Prep for release
#251
kaitejohnson
closed
1 week ago
1
Update priors spatial main
#250
kaitejohnson
closed
1 week ago
0
Issue 248: Add package workflow diagram to readme
#249
kaitejohnson
closed
2 weeks ago
3
Add package diagram to readme
#248
kaitejohnson
closed
2 weeks ago
0
Issue 245: fix y-axis scaling on `subpop_rt` plot
#247
kaitejohnson
closed
2 weeks ago
2
Second merge of `main` to `spatial-main`
#246
kaitejohnson
closed
1 week ago
1
Fix `subpop_rt` plot to have a shared y-axis
#245
kaitejohnson
closed
1 week ago
0
Issue 243: remove `sigma_rt`
#244
kaitejohnson
closed
1 week ago
1
Remove `sigma_rt` from spatial model since it isn't being used
#243
kaitejohnson
opened
2 weeks ago
0
Issue 241: update to use new `scoringutils`
#242
kaitejohnson
closed
1 week ago
1
Update to use new `scoringutils`
#241
kaitejohnson
closed
1 week ago
2
Merge main to spatial sigma rt change
#240
kaitejohnson
closed
2 weeks ago
3
Issue 238: Fix plot bug
#239
kaitejohnson
closed
2 weeks ago
6
Bug in eval plot! Looks to be missing closed dots for calibration
#238
kaitejohnson
closed
2 weeks ago
0
Time varying offset
#237
kaitejohnson
opened
3 weeks ago
1
Modify priors on `eta_sd` and `inf_feedback`
#236
kaitejohnson
closed
1 week ago
3
[Hot fix] test when pop size is not constant was failing
#235
gvegayon
closed
3 weeks ago
4
Tests not passing on checking if site_pop is constant
#234
gvegayon
closed
3 weeks ago
0
Allow for a tolerance in `assert_daily_data()` to enable NAs in count data
#233
kaitejohnson
opened
4 weeks ago
0
Check unique values of site_pop per site
#232
gvegayon
closed
3 weeks ago
2
fix link
#231
kaitejohnson
closed
4 weeks ago
3
Replacing artifact and setting retention days to 7
#230
gvegayon
closed
4 weeks ago
1
Switch to using `cfa-actions/post-artifact` for artifact posting on PRs
#229
dylanhmorris
closed
4 weeks ago
1
Modify infection feedback prior
#228
kaitejohnson
closed
1 week ago
4
Infection feedback prior is too large
#227
kaitejohnson
closed
1 week ago
1
Bug in wwvals$ww_sampled_times
#226
kaitejohnson
closed
3 weeks ago
3
Issue 215: Merge main to spatial
#224
kaitejohnson
closed
2 weeks ago
5
Enable fitting of multiple admissions catchment areas with a user supplied mapping of subpopulations
#223
kaitejohnson
opened
1 month ago
0
Allow model to handle weekly (or any specified interval) count data
#222
kaitejohnson
opened
1 month ago
0
Issue 215: Merging changes in `main` into `spatial-main`
#221
kaitejohnson
closed
1 month ago
0
Issue 184: Add outputs to `generate_simulated_data()` fxn and package data
#220
kaitejohnson
closed
3 weeks ago
3
Issue 197: rename `validate_both_datasets` function
#219
kaitejohnson
closed
4 weeks ago
1
Issue 200: Modify plot methods
#218
kaitejohnson
closed
4 weeks ago
3
Windows error with initial compiling
#217
arranhamlet
opened
1 month ago
3
Forecast hospitalizations using only wastewater data
#216
scarpino
opened
1 month ago
5
Merge `main` into `spatial-main`
#215
kaitejohnson
opened
1 month ago
0
Suppress stan warnings and print warning within `wwinference()` if convergence diagnostics fail?
#214
kaitejohnson
opened
1 month ago
0
Windows workaround in `compile_model`
#213
kaitejohnson
opened
1 month ago
1
Setup pkgdown so it hosts release and dev sites
#212
gvegayon
closed
1 month ago
4
Constrain `dur_shedding` to be greater than `t_peak`
#211
dylanhmorris
opened
1 month ago
0
Positive constrain `mode_sigma_ww_site`
#210
dylanhmorris
closed
1 month ago
2
Deployment failure
#209
kaitejohnson
closed
1 month ago
2
Fix error messaging when data extends beyond forecast date
#208
kaitejohnson
closed
1 month ago
1
Update README.md
#207
kaitejohnson
closed
1 month ago
1
Test rendering the vignette on mac and Windows in CI
#206
dylanhmorris
opened
1 month ago
2
Update NEWS.md
#205
kaitejohnson
closed
1 month ago
1
Add `R CMD check` on macOS to CI
#204
dylanhmorris
opened
1 month ago
1
Edit description with release tag
#203
kaitejohnson
closed
1 month ago
1
Fix error messaging if accidentally pass data beyond forecast date
#202
kaitejohnson
closed
1 month ago
0
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