issues
search
DasLab
/
big_library_design
MIT License
0
stars
0
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Make position 1 non-adenine when adding padding on the 5' end
#48
DigitalEmbrace
opened
1 month ago
0
Reset default pad and barcode structures using information from sequence read predictors.
#47
rkretsch
opened
7 months ago
0
Limit GC content of pads and barcode
#46
rkretsch
opened
7 months ago
0
Padding for short unpaired pads
#45
rkretsch
opened
7 months ago
1
Integrate sequence drop predictions
#44
rkretsch
opened
8 months ago
0
Deprecate library preparation script
#43
tkaragianes
closed
8 months ago
1
Deprecate library preparation script
#42
tkaragianes
opened
8 months ago
0
Better handling of input information
#41
rkretsch
opened
10 months ago
0
Last folder empty
#40
rkretsch
opened
10 months ago
0
Refactoring
#39
rkretsch
opened
10 months ago
0
Padding should allow multi-stem
#38
rkretsch
opened
1 year ago
0
Combine library after sbatch should be ordered
#37
rkretsch
opened
1 year ago
1
In windows alternate sequences are not labeled
#36
rkretsch
opened
1 year ago
0
"hang" v "buffer"
#35
rkretsch
opened
1 year ago
0
save a log file
#34
rkretsch
opened
1 year ago
0
create special option to deal with used barcodes with GU
#33
rkretsch
closed
1 year ago
1
Stress test and script rebarcoding
#32
rkretsch
opened
1 year ago
0
viral genome default split for 2/3
#31
rkretsch
closed
1 year ago
1
Increase sequence input options
#30
rkretsch
closed
1 year ago
1
share pad across mutants
#29
rkretsch
closed
1 year ago
1
Specific single mutants
#28
rkretsch
closed
1 year ago
1
Draw summary diagrams for documentation
#27
rkretsch
closed
1 year ago
1
Padding may need to consider interaction with barcode + 5'/3'
#26
rkretsch
closed
1 year ago
2
Standardize padding with eterna padding code
#25
rkretsch
opened
1 year ago
0
protocol for check fastas
#24
rkretsch
closed
1 year ago
0
Reverse complement in windows
#23
rkretsch
closed
1 year ago
1
Allow each sequence to get multiple barcodes
#22
rkretsch
closed
1 year ago
3
Many functions should allow input of list of sequences
#21
rkretsch
closed
1 year ago
1
For long barcode, use choose random instead of get all
#20
rkretsch
opened
1 year ago
3
Windows - all split genome into multiple sets
#19
rkretsch
closed
1 year ago
1
Allow code to mutate away loop in barcode if it is causing problems
#18
rkretsch
opened
1 year ago
1
Allow users to specify a file to avoid repeating barcodes.
#17
rkretsch
closed
1 year ago
1
For stem-loop barcodes, allow loop to be barcoded/random too
#16
rkretsch
opened
1 year ago
1
Colorbars on figures
#15
rkretsch
closed
1 year ago
1
Indexing
#14
rkretsch
opened
1 year ago
1
get_bp_set_from_dotbracket not PK compatible
#13
rkretsch
closed
1 year ago
1
Speed/parallelization
#12
rkretsch
closed
1 year ago
1
Robustness of padding code
#11
rkretsch
opened
1 year ago
3
Install and dependencies
#10
rkretsch
closed
1 year ago
2
Label regions in figures
#9
rkretsch
opened
1 year ago
0
Visualize the mutational sites
#8
rkretsch
closed
1 year ago
2
Add more base-pair-probability matrix generation options.
#7
rkretsch
opened
1 year ago
0
Docstrings and variable name enhancements in mutational_utils
#6
rkretsch
closed
1 year ago
1
Remove magic numbers
#5
rkretsch
closed
1 year ago
3
Other structures (non stem-loop) for barcodes
#4
rkretsch
closed
1 year ago
1
Minimum edit distance for barcodes
#3
rkretsch
closed
1 year ago
0
Check 3' and 5' seq interaction with barcode or padding?
#2
rkretsch
closed
1 year ago
1
Mutate-rescue
#1
rkretsch
opened
1 year ago
0