DrylandEcology rSFSTEP2 issues

DrylandEcology / rSFSTEP2

R program that interfaces with the STEPWAT2 C code and runs in parallel for multiple sites, climate scenarios, disturbance regimes, and time periods

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Update siteparam.in files that are part of the CO2 effects on transpiration to match updated files in SOILWAT2 master

#258 kpalmqui opened 8 months ago
1
Implement enhanced biomass under elevated CO2 via adjustment of bvt (plant-level WUE)

#257 kpalmqui closed 8 months ago
1
Implement reduced stomatal conductance in SOILWAT2 based on average CO2 of each RCP-time period combination

#256 kpalmqui closed 8 months ago
1
Update default bvt values, issue #254

#255 kpalmqui closed 1 year ago
0
Update default bvt values reflecting functional type specific WUE

#254 kpalmqui closed 1 year ago
1
Update rgroup inputs to reflect new column 'live_biomass'

#253 kpalmqui closed 1 year ago
1
Update species pestab parameters in for annual species

#252 kpalmqui closed 1 year ago
0
Update sample.sh to use correct modules on supercomputer

#251 kpalmqui closed 1 year ago
0
Update rSOILWAT2 check in Main.R to the latest version v5.3.1

#250 kpalmqui closed 1 year ago
0
Create flag and associated code to turn off C4 grasses under future conditions if current climate is not suitable

#249 kpalmqui opened 1 year ago
0
Scale eind dynamically based on climate-driven relative abundance

#248 kpalmqui closed 1 year ago
1
remove rm stepwat_test from cloneSTEPWAT2.sh

#247 kpalmqui closed 1 year ago
0
Add a check to CallSTEPWAT2.R to see if there an existing output database and delete if true

#246 kpalmqui closed 1 year ago
0
Update grepl statements to ensure an exact condition is met (i.e. site ID), rather than contains this site ID

#245 kpalmqui closed 3 years ago
1
STEPWAT2 simulation years is hard-coded to 300 in CallSTEPWAT2.R and data compilation will fail if simulation years is not equal to 300

#244 kpalmqui closed 3 years ago
1
Site-specific inputs for latitude, altitude, slope, and aspect

#243 kpalmqui opened 4 years ago
0
Cheatgrass-wildfire feedback loop is not an option within InputData_Rgroup.csv

#242 kpalmqui opened 4 years ago
0
Bugfix 240 cheatgrassrelabun

#241 kpalmqui closed 4 years ago
0
Cheatgrass space is set to 0 under future conditions due to issue in existing cheatgrass relative abundance equation

#240 kpalmqui closed 4 years ago
6
Update equation that dynamically scales the relative abundance of cheatgrass to require both conditions

#239 kpalmqui closed 4 years ago
1
Update cheatgrass fire parameters within rgroup_template.in

#238 kpalmqui closed 4 years ago
1
Update assignsiteid.py once feature_phenology_biomass_scaling is merged into streamline_output

#237 kpalmqui closed 4 years ago
1
RCP and YEARS columns are NULL for future climate scenarios in all sw_daily Tables in SQLite database

#236 kpalmqui closed 4 years ago
1
Site ID is inserted a floating point instead of an integer in SQLite Tables

#235 kpalmqui closed 4 years ago
1
Change Year from calendar year to simulation year in sw2_monthly and sw2_yearly SQLite Tables

#234 kpalmqui closed 4 years ago
1
New algorithm for scaling biomass fractions coming out of scale_phenology

#233 kpalmqui closed 4 years ago
1
Raw daily output is inserted into SQLite output database instead of aggregated daily output

#232 kpalmqui closed 4 years ago
1
Remove additional files from STEPWAT2 after the make in cloneSTEPWAT2.sh

#231 kpalmqui closed 4 years ago
1
Runs fail on Teton due to wrong file path in sample.sh

#230 kpalmqui closed 4 years ago
1
Remove unused argument na.rm=T from dbW_estimate_WGen_coefs in MarkovWeatherFileGenerator.R

#229 kpalmqui closed 4 years ago
1
Add additional call to scale_phenology in Main.R

#228 kpalmqui closed 4 years ago
1
Update scale_phenology function to expect a new argument: default phenological activity values

#227 kpalmqui closed 4 years ago
1
Update default species parameters

#226 kpalmqui closed 4 years ago
0
Update default species parameters for "all/"fixed1" site/treatment in InputData_Species.csv

#225 kpalmqui closed 4 years ago
1
New algorithm for rescaling % live fractions returned by scale_phenology

#224 kpalmqui closed 4 years ago
3
Calculation of a new variable - correlation between default temperature and default phenological activity to be passed into updated function scale_phenology

#223 kpalmqui closed 4 years ago
1
New proposed default litter values for cheatgrass

#222 kpalmqui closed 4 years ago
1
Streamline output

#221 chaukap closed 2 years ago
0
Site SQLite databases are labeled according to their R_program folder not their site ID

#220 kpalmqui closed 4 years ago
3
Update transpiration coefficients based on Schenk & Jackson 2003

#219 kpalmqui closed 4 years ago
2
Create shell scripts to call compareFiles.R on a computing cluster

#218 chaukap closed 4 years ago
13
Update default values of var and pseed for annual species in species_template.in

#217 kpalmqui closed 4 years ago
2
Error with multiple threads writing to single SQLite database

#216 chaukap closed 4 years ago
23
Remove redundancies in rSFSTEP2 flow

#215 chaukap closed 4 years ago
7
Update default trco_shrub parameters in InputData_SoilLayers.csv

#214 kpalmqui closed 4 years ago
1
Remove unnecessary files that are part of STEPWAT2 in cloneSTEPWAT2.sh after STEPWAT2 is compiled in rSFSTEP2

#213 kpalmqui closed 4 years ago
1
Merge fg_specificity_sxw into the phenology scaling branch

#212 chaukap closed 4 years ago
6
Increase biomass fraction values for most functional types

#211 kpalmqui closed 4 years ago
1
Adjust %live fractions for some STEPPE functional types

#210 kpalmqui closed 4 years ago
3
merge master into fg_specificity_sxw

#209 chaukap closed 4 years ago
0