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DrylandEcology
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rSFSTEP2
R program that interfaces with the STEPWAT2 C code and runs in parallel for multiple sites, climate scenarios, disturbance regimes, and time periods
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Update siteparam.in files that are part of the CO2 effects on transpiration to match updated files in SOILWAT2 master
#258
kpalmqui
opened
10 months ago
1
Implement enhanced biomass under elevated CO2 via adjustment of bvt (plant-level WUE)
#257
kpalmqui
closed
10 months ago
1
Implement reduced stomatal conductance in SOILWAT2 based on average CO2 of each RCP-time period combination
#256
kpalmqui
closed
10 months ago
1
Update default bvt values, issue #254
#255
kpalmqui
closed
1 year ago
0
Update default bvt values reflecting functional type specific WUE
#254
kpalmqui
closed
1 year ago
1
Update rgroup inputs to reflect new column 'live_biomass'
#253
kpalmqui
closed
1 year ago
1
Update species pestab parameters in for annual species
#252
kpalmqui
closed
1 year ago
0
Update sample.sh to use correct modules on supercomputer
#251
kpalmqui
closed
1 year ago
0
Update rSOILWAT2 check in Main.R to the latest version v5.3.1
#250
kpalmqui
closed
1 year ago
0
Create flag and associated code to turn off C4 grasses under future conditions if current climate is not suitable
#249
kpalmqui
opened
2 years ago
0
Scale eind dynamically based on climate-driven relative abundance
#248
kpalmqui
closed
1 year ago
1
remove rm stepwat_test from cloneSTEPWAT2.sh
#247
kpalmqui
closed
1 year ago
0
Add a check to CallSTEPWAT2.R to see if there an existing output database and delete if true
#246
kpalmqui
closed
1 year ago
0
Update grepl statements to ensure an exact condition is met (i.e. site ID), rather than contains this site ID
#245
kpalmqui
closed
3 years ago
1
STEPWAT2 simulation years is hard-coded to 300 in CallSTEPWAT2.R and data compilation will fail if simulation years is not equal to 300
#244
kpalmqui
closed
3 years ago
1
Site-specific inputs for latitude, altitude, slope, and aspect
#243
kpalmqui
opened
4 years ago
0
Cheatgrass-wildfire feedback loop is not an option within InputData_Rgroup.csv
#242
kpalmqui
opened
4 years ago
0
Bugfix 240 cheatgrassrelabun
#241
kpalmqui
closed
4 years ago
0
Cheatgrass space is set to 0 under future conditions due to issue in existing cheatgrass relative abundance equation
#240
kpalmqui
closed
4 years ago
6
Update equation that dynamically scales the relative abundance of cheatgrass to require both conditions
#239
kpalmqui
closed
4 years ago
1
Update cheatgrass fire parameters within rgroup_template.in
#238
kpalmqui
closed
4 years ago
1
Update assignsiteid.py once feature_phenology_biomass_scaling is merged into streamline_output
#237
kpalmqui
closed
4 years ago
1
RCP and YEARS columns are NULL for future climate scenarios in all sw_daily Tables in SQLite database
#236
kpalmqui
closed
4 years ago
1
Site ID is inserted a floating point instead of an integer in SQLite Tables
#235
kpalmqui
closed
4 years ago
1
Change Year from calendar year to simulation year in sw2_monthly and sw2_yearly SQLite Tables
#234
kpalmqui
closed
4 years ago
1
New algorithm for scaling biomass fractions coming out of scale_phenology
#233
kpalmqui
closed
4 years ago
1
Raw daily output is inserted into SQLite output database instead of aggregated daily output
#232
kpalmqui
closed
4 years ago
1
Remove additional files from STEPWAT2 after the make in cloneSTEPWAT2.sh
#231
kpalmqui
closed
4 years ago
1
Runs fail on Teton due to wrong file path in sample.sh
#230
kpalmqui
closed
4 years ago
1
Remove unused argument na.rm=T from dbW_estimate_WGen_coefs in MarkovWeatherFileGenerator.R
#229
kpalmqui
closed
4 years ago
1
Add additional call to scale_phenology in Main.R
#228
kpalmqui
closed
4 years ago
1
Update scale_phenology function to expect a new argument: default phenological activity values
#227
kpalmqui
closed
4 years ago
1
Update default species parameters
#226
kpalmqui
closed
4 years ago
0
Update default species parameters for "all/"fixed1" site/treatment in InputData_Species.csv
#225
kpalmqui
closed
4 years ago
1
New algorithm for rescaling % live fractions returned by scale_phenology
#224
kpalmqui
closed
4 years ago
3
Calculation of a new variable - correlation between default temperature and default phenological activity to be passed into updated function scale_phenology
#223
kpalmqui
closed
4 years ago
1
New proposed default litter values for cheatgrass
#222
kpalmqui
closed
4 years ago
1
Streamline output
#221
chaukap
closed
2 years ago
0
Site SQLite databases are labeled according to their R_program folder not their site ID
#220
kpalmqui
closed
4 years ago
3
Update transpiration coefficients based on Schenk & Jackson 2003
#219
kpalmqui
closed
4 years ago
2
Create shell scripts to call compareFiles.R on a computing cluster
#218
chaukap
closed
4 years ago
13
Update default values of var and pseed for annual species in species_template.in
#217
kpalmqui
closed
4 years ago
2
Error with multiple threads writing to single SQLite database
#216
chaukap
closed
4 years ago
23
Remove redundancies in rSFSTEP2 flow
#215
chaukap
closed
4 years ago
7
Update default trco_shrub parameters in InputData_SoilLayers.csv
#214
kpalmqui
closed
4 years ago
1
Remove unnecessary files that are part of STEPWAT2 in cloneSTEPWAT2.sh after STEPWAT2 is compiled in rSFSTEP2
#213
kpalmqui
closed
4 years ago
1
Merge fg_specificity_sxw into the phenology scaling branch
#212
chaukap
closed
4 years ago
6
Increase biomass fraction values for most functional types
#211
kpalmqui
closed
4 years ago
1
Adjust %live fractions for some STEPPE functional types
#210
kpalmqui
closed
4 years ago
3
merge master into fg_specificity_sxw
#209
chaukap
closed
4 years ago
0
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