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Molmed
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checkQC
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
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DATAOPS-779: Fix undetermined percentage handler
#117
matrulda
closed
2 months ago
2
Add support for BCLConvert outputs / metrics
#116
apeltzer
opened
2 months ago
3
Dataops 638 q30 drop per cycle
#115
monikaBrandt
closed
5 months ago
0
Fixed reads given multiple lanes
#114
nkongenelly
closed
6 months ago
3
Added index positions
#113
nkongenelly
closed
7 months ago
4
DATAOPS-635: check index q30
#112
nkongenelly
closed
7 months ago
0
Update NovaSeqX reagent recognizer
#111
Aratz
closed
11 months ago
1
percent_phix on undetermined_percentage_handler.py
#110
sgaleraalq
opened
1 year ago
1
`IndexError` with format string
#109
Aratz
opened
1 year ago
0
Update to py3.10
#108
matrulda
closed
1 year ago
0
Update dependencies
#107
Aratz
closed
1 year ago
0
Develop 2548 add nova seq x support
#106
Aratz
closed
1 year ago
2
Add support for NovaSeq X
#105
Aratz
closed
1 year ago
0
Added values for NovaseqX PlusX
#104
sarek928
closed
1 year ago
3
Fix or remove CodeCov
#103
matrulda
closed
8 months ago
1
DEVELOP-2147: Add support for Miseq Nano and Micro
#102
matrulda
closed
2 years ago
9
Use PyYAML's safe_load instead of load
#101
slohse
closed
3 years ago
0
Update pypi deploy token
#100
mariya
closed
3 years ago
0
Make sure automatic tests are run for multiple python versions
#99
matrulda
opened
3 years ago
0
Error in code for UndeterminedPercentageHandler
#98
maleasy
opened
3 years ago
2
updated output messages according to DEVELOP-492
#97
alvaannett
closed
3 years ago
0
Bio 2145 update q30 novaseq
#96
alvaannett
closed
3 years ago
0
Nextseq2000 support
#95
bwlang
opened
3 years ago
0
Feature request - e-mail reports
#94
matthdsm
opened
3 years ago
3
Remove unused requirements file
#93
matrulda
closed
4 years ago
1
Update QC thresholds and remove unnecessary comments
#92
matrulda
closed
4 years ago
0
Update path to apidoc
#91
matrulda
closed
4 years ago
0
Reflect that checkQC is now in bioconda; fix a missing word.
#90
cbrueffer
closed
4 years ago
2
Update interop requirement and bump version
#89
matrulda
closed
4 years ago
2
Issues for NovaSeq SP with interop==1.1.9
#88
matrulda
closed
4 years ago
0
Option to use closest read length
#87
matrulda
closed
4 years ago
2
Detect index switch + reverse complemented index
#86
matrulda
opened
5 years ago
0
Mention downgrade errors in docs
#85
matrulda
closed
5 years ago
0
DEVELOP-641 Downgrade error level
#84
matrulda
closed
5 years ago
5
CheckQC will ignore white-listed indexes
#83
johandahlberg
closed
5 years ago
2
Update config.yaml
#82
sarek928
closed
5 years ago
1
NovaSeq SP 101bp
#81
sarek928
closed
5 years ago
3
Fail on index error
#80
johandahlberg
closed
5 years ago
4
NovaSeq SP support
#79
monikaBrandt
closed
6 years ago
5
Undetermined index handler: Evaluate dual indexes separately
#78
matrulda
closed
5 years ago
0
iSeq instrument names start with FS
#77
johandahlberg
closed
6 years ago
2
Finish UnidentifiedIndexHandler
#76
johandahlberg
closed
6 years ago
2
Updated interop dependency and iSeq added to docs
#75
matrulda
closed
6 years ago
3
iSeq support missing in README
#74
johandahlberg
closed
6 years ago
0
Update version to 2.0.0
#73
matrulda
closed
6 years ago
1
Reads per SampleName rather than SampleId
#72
matrulda
closed
6 years ago
7
Who is using CheckQC?
#71
johandahlberg
opened
6 years ago
0
Check indexes and let phix level decide undetermined threshold
#70
johandahlberg
closed
6 years ago
3
WIP: Adding support for NextSeq
#69
johandahlberg
closed
2 months ago
1
Improved error handling
#68
johandahlberg
closed
6 years ago
2
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