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checkQC
CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
http://checkqc.readthedocs.io/
GNU General Public License v3.0
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Support for iSeq, and improved org for testing
#67
johandahlberg
closed
6 years ago
2
Fixed error in error rate message
#66
johandahlberg
closed
6 years ago
1
Supporting NextSeq and MiniSeq
#65
avilella
opened
6 years ago
12
Adding Novaseq S1, S2, and S4 support
#64
johandahlberg
closed
6 years ago
1
API docs does not get generate on readthedocs.io
#63
johandahlberg
closed
4 years ago
1
Updated docs on uploading to PyPI
#62
johandahlberg
closed
6 years ago
1
Fix Travis PyPI password issues
#61
johandahlberg
closed
6 years ago
1
Add provider for deploy
#60
johandahlberg
closed
6 years ago
2
Automatically push tags to PyPI
#59
johandahlberg
closed
6 years ago
3
Feature/avoid forking from service
#58
b97pla
closed
6 years ago
5
Typo in config
#57
matrulda
closed
6 years ago
1
Handle division by zero in undetermined percentage handler
#56
johandahlberg
closed
6 years ago
2
checkQC can't handle total yield being zero
#55
sarek928
closed
6 years ago
0
Read length equal to number of cycles
#54
matrulda
closed
6 years ago
9
Error when using lower bound in read length interval
#53
matrulda
closed
6 years ago
4
Adds JOSS batch to README
#52
johandahlberg
closed
6 years ago
1
Update paper
#51
johandahlberg
closed
6 years ago
3
Displayed threshold is now divided by the number of samples in the lane
#50
matrulda
closed
6 years ago
3
Reads per sample handler always report threshold based on one sample per lane
#49
matrulda
closed
6 years ago
0
Configurable bcl2fastq output
#48
johandahlberg
closed
6 years ago
1
Path to bcl2fastq output in config
#47
matrulda
closed
6 years ago
0
Interop can now be installed via PyPI
#46
johandahlberg
closed
6 years ago
3
Adding JOSS paper
#45
johandahlberg
closed
6 years ago
3
Adding contributing guidelines
#44
johandahlberg
closed
6 years ago
1
"Complete" API Docs
#43
johandahlberg
closed
6 years ago
1
Updated docs
#42
johandahlberg
closed
6 years ago
3
Adding pypi badge to README
#41
johandahlberg
closed
7 years ago
1
Improve exceptions handling
#40
johandahlberg
closed
7 years ago
1
FileNotFoundError: [Errno 2] No such file or directory: '... /Unaligned/Stats/Stats.json'
#39
af8
closed
7 years ago
2
Improved information in log output and README
#38
johandahlberg
closed
7 years ago
2
Update readme and qc criteria
#37
johandahlberg
closed
7 years ago
3
installation on Ubuntu 14.04
#36
avilella
closed
6 years ago
18
Display expected thresholds in normal mode
#35
johandahlberg
closed
7 years ago
0
Improve README
#34
johandahlberg
closed
7 years ago
0
Include logger config and use click.version
#33
johandahlberg
closed
7 years ago
1
Bug fixes
#32
johandahlberg
closed
7 years ago
1
Attempting to fix the behavior of codecov
#31
johandahlberg
closed
7 years ago
2
Make sure application version is clear, update README and bump version to 1.1.0
#30
johandahlberg
closed
7 years ago
1
WIP: Initial draft for webservice implementation
#29
johandahlberg
closed
7 years ago
1
Adding json mode
#28
johandahlberg
closed
7 years ago
1
Validate configurations and give error on missing error rate
#27
johandahlberg
closed
7 years ago
1
Fixing minor things found when preparing for validation testing
#26
johandahlberg
closed
7 years ago
1
Added NovaSeq support to README
#25
johandahlberg
closed
7 years ago
2
Reads per sample handler
#24
matrulda
closed
7 years ago
2
Adding preliminary NovaSeq support
#23
johandahlberg
closed
7 years ago
1
Fix integration test
#22
johandahlberg
closed
7 years ago
1
Adding testdata
#21
monikaBrandt
closed
7 years ago
1
Separate rapid from non rapid
#20
monikaBrandt
closed
7 years ago
2
Reading default config and have instrument specific pickup of reagent version
#19
johandahlberg
closed
7 years ago
1
Q30 handler
#18
matrulda
closed
7 years ago
1
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