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Nextomics
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NextDenovo
Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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IndexError: list index out of range
#163
taotaoyuan
closed
1 year ago
1
chimeric mitochondrial-nuclear scaffolds
#162
kanchond
opened
1 year ago
1
Unable to run NextDeVovo on the test data
#161
priscilla-glenn
closed
1 year ago
2
sh Illegal option -o pipefail
#160
bfr42
closed
1 year ago
3
nextgraph floating point exception error
#159
kanchond
opened
1 year ago
2
db_stat failed
#158
alexvasilikop
closed
1 year ago
1
nextgraph Segmentation fault
#157
tingyang-commits
opened
1 year ago
1
no ctg_cns.sh was generated
#156
jurin0811
opened
1 year ago
10
GFA output crashes NexdDenovo even on provided test dataset
#155
jflot
closed
1 year ago
5
Question about how NextDenovo correct raw ONT reads
#154
Jesson-mark
closed
1 year ago
2
segmentation fault after ctg_graph was done
#153
HippoYI
closed
1 year ago
10
Reproducibility of results
#152
dlavrov
closed
1 year ago
1
#returned non-zero exit status 137, error info: .#
#151
lide1993
closed
1 year ago
3
Help with parameters for desktop run
#150
bensprung
closed
1 year ago
7
How to know which reads are used in the assembled conting
#149
kuangzhuoran
closed
2 years ago
1
Publication plan
#148
rkajitani
closed
2 years ago
2
Genome size is much smaller than expected
#147
2benaszq
opened
2 years ago
5
Unsuccessfully run test_data "BrokenPipeError: [Errno 32] Broken pipe"
#146
ChooseelBunsuwansakul
closed
2 years ago
3
Unusual N50 and genome size from triocanu hap reads
#145
hrluo93
opened
2 years ago
4
What are the parts of contig titles mean for?
#144
Neo-xbx-00
closed
2 years ago
3
nextgraph_options caused error
#143
DaiWeiKIB
opened
2 years ago
0
nextgraph_options adjusting caused "IndexError: list index out of range"
#142
DaiWeiKIB
closed
2 years ago
6
hifi reads assembly
#141
kibzhulab
closed
2 years ago
1
Request conda version
#140
Yedomon
opened
2 years ago
1
NextDenovo seems not working properly...
#139
xiahouzuoying
opened
2 years ago
9
A error when submit the job
#138
xiahouzuoying
closed
2 years ago
0
Error: '/bin/sh nextdenovo/01_rundir/01.raw_align/02.raw_align.sh.work/raw_align0/raw_align001/nextDenovo.sh
#137
qianqianqian0717
opened
2 years ago
9
Genome assembly of the autotetraploid plant
#136
fengyuanli304
opened
2 years ago
1
Command terminated by signal 9
#135
kreyszhang
closed
2 years ago
3
AttributeError: 'Cluster' object has no attribute '_set_lsf_mem'
#134
ryys1122
closed
2 years ago
11
segmentation fault building ctg_graph using NEXTDENOVO/2.4.0
#133
gitcruz
opened
2 years ago
1
Contigs number less than chromosome number
#132
Wenfei-Xian
closed
2 years ago
0
nextgraph Floating point exception(core dumped)
#131
guoqunfei
opened
2 years ago
1
Parameters for a highly heterozygous genome
#130
A-J-F-Mackintosh
closed
2 years ago
6
Reduce miss assembly
#129
ghost
closed
2 years ago
5
srun: error
#128
fengyuanli304
closed
1 year ago
3
error on slurm system
#127
zskey-zn
closed
2 years ago
3
Assembly size is bigger than estimated size by genome survey
#126
kuangtianhui
opened
2 years ago
3
HiFi and ONT
#125
biozhangzhou
closed
2 years ago
1
Can not get nextDenovo.sh.done in 03.ctg_graph/03.ctg_cns.sh.work/ctg_cns0 directory
#124
shehongbing
opened
2 years ago
1
Error using read_type = hifi and fastq.gz file
#123
davised
closed
2 years ago
6
MemoryError
#122
vanbie
opened
2 years ago
2
How to get the assembly greater then 3.5Gb?
#121
Ural-Yunusbaev
closed
2 years ago
2
raw align error
#120
Jianz9293
closed
2 years ago
5
read_type: hifi; File ".../nextDenovo", line 856, in <module> main(args) ... IndexError: list index out of range
#119
Ural-Yunusbaev
closed
2 years ago
6
ctg_cns.py fails
#118
ctxchris
closed
3 years ago
0
Using multiple data types
#117
EvoMedLab
opened
3 years ago
1
Error in line 856, line 568 and line 8
#116
anacatalan
closed
2 years ago
2
Resume
#115
ardy20
opened
3 years ago
1
slurmstepd: error: *** JOB CANCELLED DUE TO TIME LIMIT ***
#114
dpaudel
opened
3 years ago
1
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