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Nextomics
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NextDenovo
Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
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nextgraph segmentation fault
#113
ucassee
opened
3 years ago
13
Recommended min. sequencing depth?
#112
cabbagesofdoom
closed
3 years ago
4
Empty result with using Pacbio HiFi reads
#111
Axolotl233
closed
3 years ago
6
[ERROR] 2021-03-29 21:33:04,452 seed_cns failed: please check the following logs:
#110
kuangtianhui
closed
3 years ago
3
[blocksize] and [pa_correction] in run.cfg
#109
dexon9109
closed
3 years ago
3
License
#108
rivera10
closed
2 years ago
2
Conda installation
#107
rivera10
opened
3 years ago
0
"-P projectID" argument for PBS pro
#106
cgjosephlee
closed
2 years ago
4
NextDenovo/bin/seq_dump nanopore.fastq does not exist!
#105
li0604
closed
3 years ago
2
Decreased N50 with higher sequencing depth
#104
nadegeguiglielmoni
opened
3 years ago
10
Asking for the ‘read_cutoff’ and 'seed_cutoff' parameters
#103
Hans-zhao831
opened
3 years ago
3
Should I polish initial contig using ONT reads?
#102
shehongbing
closed
3 years ago
1
error in get nd.asm.p.fasta
#101
ucassee
closed
3 years ago
15
compare v2.4 with v2.2-beta.0
#100
HanKMU
opened
3 years ago
6
How can I get more information of the random assembly nd.asm.p.fasta ?
#99
tinyfallen
closed
3 years ago
2
Segmentation fault
#98
Johnsonzcode
closed
3 years ago
15
ARM support
#97
starskyzheng
closed
3 years ago
1
the question about nd.asm.p.fasta
#96
WenhaoLiu0218
closed
3 years ago
5
minmap align is too slow!!
#95
yangzhou0916
closed
3 years ago
0
Low BUSCO completeness value
#94
fengyuanli304
opened
3 years ago
2
assembly graph
#93
heziqing
closed
3 years ago
2
an unknown error
#92
yangzhuang0916
opened
3 years ago
1
seed_cns failed
#91
linshengnan2020
closed
3 years ago
11
ctg_align aborting
#90
fengyuanli304
closed
3 years ago
2
Asking for parameters suggestion for NextDenovo using
#89
LeoCao-X
opened
3 years ago
4
How to check random_round results in Nextdenovo v2.3.1
#88
LeoCao-X
closed
3 years ago
2
“stop” at the cns_align step
#87
WenhaoLiu0218
closed
3 years ago
4
Segmentation fault (core dumped)
#86
Morriyaty
opened
3 years ago
6
minimap2-nd: sketch.c:84: mm_sketch: Assertion `len > 0 && (w > 0 && w < 256) && (k > 0 && k <= 28)' failed.
#85
Johnsonzcode
closed
3 years ago
5
too many step to run
#84
longzhangnation
closed
3 years ago
2
the disk consuming for raw reads correction
#83
longzhangnation
opened
3 years ago
3
Pulling corrected long reads with v2.3.0
#82
KevinBredemeyer
closed
3 years ago
2
version `GLIBC_2.14' not found
#81
unique379
closed
3 years ago
5
What do contig types 'junction' and 'breakpoint' mean?
#80
zhangrengang
closed
3 years ago
1
python: ctg_cns.c:601: generate_lqseqs_from_cluster: Assertion `lqseq->start == clu->r.s' failed.
#79
zhangrengang
closed
3 years ago
2
NextDenovo stops running but doesn't exit when a sub-job fails.
#78
TypicalSEE
closed
3 years ago
4
How to run nextdenovo on a set of cloud service with SGE?
#77
AntetokounmJie
closed
3 years ago
2
The assembled genome is much smaller than predicted, pacbio reads
#76
Jin-Sun-OUC
closed
3 years ago
2
nextdenovo correct pacbio subreads
#75
licheng0921
closed
3 years ago
5
How to get genome assembly larger than 3.5G?
#74
pengbo233
closed
3 years ago
1
Unexplained status when I run
#73
Weihankk
closed
4 years ago
2
assembly big genome
#72
yilunhuangyue
closed
4 years ago
1
Suggested length cutoff: 0 bp
#71
ghost
closed
4 years ago
1
Some bug about nextcorrect step and how can i continue the job after i change some parameter?
#70
AntetokounmJie
closed
3 years ago
5
OverflowError: cannot serialize a string larger than 2 GiB
#69
NukesRadars
opened
4 years ago
1
nextdenovo+wtdbg2
#68
fengyuanli304
closed
3 years ago
24
Failed in regional assembly by NextDenovo.
#67
biozhangzhou
closed
3 years ago
4
Does NextDenovo apply to diploid genome assembly?
#66
huangyixian123
closed
3 years ago
3
too slow in minimap2-nd step
#65
ucassee
closed
4 years ago
12
sort_align failed
#64
ucassee
closed
4 years ago
1
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