issues
search
Nextomics
/
NextDenovo
Fast and accurate de novo assembler for long reads
GNU General Public License v3.0
350
stars
52
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
LSF memory request reports a bug and the fixing func
#63
haoliu1213
closed
3 years ago
9
GLIBC2.14 not found
#62
Lyang556
closed
3 years ago
19
Reducing RAM usage on a desktop
#61
nadegeguiglielmoni
closed
4 years ago
3
more raw data used to assembly
#60
DengHAU
closed
4 years ago
4
Can NextDenovo be used for metagenomic samples? (Nanopore data)
#59
jinhao94
closed
4 years ago
2
NextDenovo on SLURM
#58
cbirbes
closed
2 years ago
2
time not found
#57
000generic
closed
4 years ago
3
Resume the job when terminated unexpectedly
#56
tiramisutes
closed
4 years ago
1
the problem of software running in v2.2-beta.0 version
#55
lbbobo
closed
3 years ago
6
Can not get_cns
#54
shehongbing
closed
4 years ago
2
Question about -b, --blacklist
#53
iggyB
closed
4 years ago
2
nextgraph, could it run with multi thread?
#52
fangdm
closed
3 years ago
8
Raw align failed
#51
kinglyyang
closed
4 years ago
10
problem:The data from canu's correctedReads had no results with the nextdenovo software.
#50
clover163
closed
4 years ago
7
Questions about "seed_cutoff" option
#49
TypicalSEE
opened
4 years ago
10
processes have been killed by the cgroup out-of-memory handler.
#48
biowackysci
closed
4 years ago
10
nextgraph: asg.c:1270: update_graph: Assertion `mode == 10' failed.
#47
huangyixian123
closed
3 years ago
3
how to select a prefect results
#46
shehongbing
closed
4 years ago
2
main: Assertion `opts.max_mem > 100000000' failed
#45
shehongbing
closed
4 years ago
2
assemble result
#44
shehongbing
closed
4 years ago
9
how to run on LSF system?
#43
huangyixian123
closed
4 years ago
1
analysis tasks done but the following pipeline died (KeyError: '009')
#42
DengHAU
closed
4 years ago
5
how to restart the whole pipeline when some tasks is failed?
#41
ryys1122
closed
4 years ago
1
Add GFA in output
#40
xuzhougeng
closed
4 years ago
2
how can I reduce the number of process and storage at raw align step?
#39
zhenzhenS
closed
4 years ago
1
ovl_sort.c:688: main: Assertion `opts.max_mem > 100000000' failed
#38
wook2014
closed
4 years ago
1
there is not enough disk space
#37
shehongbing
closed
4 years ago
6
self.drmaa.exit() stuck
#36
lskfs
closed
4 years ago
3
Assemble the genome with corrected fasta using NextDenovo2.1
#35
jiahaow123456
closed
4 years ago
2
What is the memory requirement for nodes when run a huge input fastq?
#34
zengpeng2012
closed
4 years ago
5
Raw data or corrected data ??
#33
shehongbing
closed
4 years ago
1
Cann't get the cns.fasta
#32
shehongbing
closed
4 years ago
6
How to get genome assembly larger than 3.5G?
#31
zijiangyang
closed
4 years ago
1
The question of error cerrection
#30
mida5730
closed
4 years ago
1
NextDenovo/bin/seq_dump: cannot execute binary file
#29
YongZhou2019
closed
4 years ago
2
Running error assembling Pacbio data
#28
Dichromatism
closed
4 years ago
1
task assemble error
#27
BoWangXJTU
closed
4 years ago
4
NextDenovo assemble has no result file
#26
ruanyingfei
closed
4 years ago
5
task = ?
#25
BoWangXJTU
closed
4 years ago
4
The error of the seed_cutoff
#24
shehongbing
closed
4 years ago
2
jobs in step 02.cns_align/02.cns_align.sh.work runs extremely slow
#23
zijiangyang
closed
4 years ago
1
Ask help for software usage
#22
panbei123
closed
4 years ago
2
about the bug in nextdenovo2.0
#21
wangzhongkai1
closed
4 years ago
9
How to run nextdenovo on lsf system
#20
zzlzef
closed
4 years ago
1
A problem I met when running NextDenovo
#19
zjwang0831
closed
4 years ago
7
Segmentation fault
#18
SC-Duan
closed
4 years ago
6
Parallel job parameter of NextDenovo when run in local mode
#17
xuzhougeng
closed
4 years ago
1
How do I run NextDenovo on my SLURM / SGE / PBS / LSF / Torque system?
#16
Rachel-pku
closed
4 years ago
23
test run is finished, but assembly file is none
#15
bioone
closed
4 years ago
1
Assembly size is smaller than estimated genome size
#14
yilunhuangyue
closed
4 years ago
3
Previous
Next