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PoonLab
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OpenRDP
An open-source re-implementation of the RDP4 recombination detection program
GNU General Public License v3.0
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Create a distance matrix between query sequences and reference sequences
#97
GopiGugan
closed
5 days ago
8
User reported issue trying to install OpenRDP on Linux cluster
#96
ArtPoon
opened
2 weeks ago
2
Parallel processing
#95
ArtPoon
opened
2 weeks ago
1
User request: constrain analysis to one parent sequence
#94
ArtPoon
opened
2 weeks ago
4
RDP gives P-value greater than 1
#93
WilliamZekaiWang
opened
3 weeks ago
2
Simulation testing
#92
ArtPoon
opened
3 weeks ago
0
Iss85
#91
WilliamZekaiWang
closed
3 weeks ago
0
The option -m does not recognize the method
#90
PaulaPrietoOliveira
closed
1 month ago
1
Error running openrdp
#89
PaulaPrietoOliveira
closed
5 days ago
13
Indexing issue when passing in a reference sequence (Bootscan)
#88
pathogen-detection
opened
2 months ago
7
进程池使用错误 (Process pool usage error)
#87
pathogen-detection
closed
3 weeks ago
4
Installing Failure
#86
guoqiangu
closed
2 months ago
23
Parallel computing of triplets
#85
ArtPoon
opened
2 months ago
13
Random permutation to generate null distribution
#84
ArtPoon
opened
3 months ago
0
Check adjustment of p-values for multiple comparisons
#83
ArtPoon
opened
3 months ago
0
Multiple comparison correction and permutation
#82
Oliveira-Hugo
closed
3 months ago
3
Resolve FileNotFound error for 3Seq
#81
ArtPoon
closed
3 months ago
0
Unit test failures
#80
ArtPoon
closed
3 months ago
1
DeprecationWarning with simple run
#79
ArtPoon
closed
2 weeks ago
3
Divide by zero encountered in unit tests
#78
ArtPoon
opened
3 months ago
3
Potential duplication of code for merge_breakpoints
#77
ArtPoon
opened
3 months ago
2
Some input files cause FileNotFoundError exception for 3Seq
#76
wdenggithub
closed
3 months ago
10
Can't use -m parameter
#75
Wesady
closed
4 months ago
6
fixes to #73
#74
WilliamZekaiWang
closed
5 months ago
2
ValueError thrown when running GENECONV
#73
ArtPoon
closed
5 months ago
5
Bootscan/Geneconv error
#72
AbhishakeL
closed
5 months ago
0
Linear Genome Setting
#71
paolij
opened
6 months ago
11
Installation Error
#70
paolij
closed
5 months ago
6
Excessive text being printed to console
#69
ArtPoon
opened
8 months ago
1
Dev
#68
ArtPoon
closed
8 months ago
2
Unittest coverage issue
#67
SandeepThokala
closed
9 months ago
2
Iss64
#66
SandeepThokala
closed
9 months ago
3
3Seq method not running on windows 11
#65
SandeepThokala
closed
10 months ago
3
detect recombination breakpoints in a query sequence by comparing it against a reference set.
#64
genostack
opened
1 year ago
7
How to prepare sequences for recombination analysis?
#63
NailouZhang
closed
1 year ago
2
OpenRDP run slow, Can I speed it up?
#62
NailouZhang
closed
1 year ago
4
install error
#61
123456zrh
closed
1 year ago
7
should trim the sequence before I run OpenRDP?
#60
NailouZhang
closed
1 year ago
1
Dev
#59
ArtPoon
closed
1 year ago
0
UnboundLocalError in both master and dev branch
#58
ArtPoon
closed
1 year ago
2
Update README with instructions on how to use Docker image
#57
ArtPoon
closed
1 year ago
0
Refining breakpoints with HMM
#56
ArtPoon
opened
1 year ago
0
Other metrics to determine which sequence is recombinant
#55
ArtPoon
opened
1 year ago
0
Reconciling recombination events
#54
ArtPoon
opened
1 year ago
0
Discordance between OpenRDP and RDP v5.5
#53
ArtPoon
closed
1 year ago
9
Memory consumption, speed benchmarking
#52
ArtPoon
closed
1 month ago
1
Dev
#51
ArtPoon
closed
1 year ago
1
Docker image for OpenRDP
#50
brj1
closed
1 year ago
2
Make Triplet a generator?
#49
ArtPoon
closed
1 year ago
3
Update unit tests
#48
ArtPoon
closed
1 year ago
8
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