STOmics SAW issues - Githubissues

STOmics / SAW

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SAW-A40004: IPR "ssDNA/QCInfo" attribute "QCPassFlag" is less than 1.

#154 Druidzha closed 2 days ago
11
SAW-A40004: IPR "ssDNA/QCInfo" attribute "QCPassFlag" is less than 1.

#153 Druidzha opened 3 days ago
2
SAW_7.1.sif report error

#152 lvmt closed 4 days ago
0
SAW ipr2img failed

#151 Clouate opened 5 days ago
1
number of thread Error at step cell_cluster when stereoPipeline_v7.1_manual_part2.sh

#150 wzhang42 opened 5 days ago
2
'utf-8' codec can't encode characters in position 16154-16159: surrogates not allowed

#149 Donbbit opened 6 days ago
7
Error: [2024-9-20 20:5:42] SAW-A12102: open file- falied

#148 liangyuli12138 opened 1 week ago
1
SAW-A40004: The sequencing data is empty.

#147 joweihsieh opened 2 weeks ago
3
Is there a way to add cellbin's cell type annotation results into GEF, and plot the spatial annotation with cell shape in stereopy?

#146 ruiliphy opened 2 weeks ago
1
Issue with checkGTF on Genbank gtf

#145 maximelepetit opened 2 weeks ago
1
registration failed cannot convert float NaN to integer

#144 XiaolongYang-HZAU closed 3 weeks ago
0
UMAP cellbin report informations

#143 maximelepetit opened 1 month ago
8
How to process GEM file

#142 sli231 opened 1 month ago
6
How to process data without mask files

#141 youwh1996 opened 1 month ago
3
Files cannot be read when mapping.

#140 regenerativescience closed 1 month ago
6
About StereoMap & Image Studio V3.0

#139 sarahshuang closed 1 month ago
4
Increase Buf Size

#138 minhtien-trinh opened 1 month ago
7
Images of nuclei acid staining Missing

#137 Tailion9 closed 1 month ago
2
CID whitelist

#136 tenlives opened 1 month ago
3
Step03 failure by SAW-A40001

#135 regenerativescience closed 2 months ago
3
cannot build SAW via singularity

#134 sarahshuang closed 1 month ago
8
Step07.report TypeError: float() argument must be a string or a number, not 'Vividict'

#133 Changzhanhe opened 2 months ago
3
DAPI staining that match with cellbin cell coordinates

#132 YiqianGu opened 2 months ago
3
Stomics raw.gef file empty?

#131 kf-cuanschutz closed 2 months ago
6
EXITING because of FATAL PARAMETER ERROR:

#130 GLking123 closed 2 months ago
2
Problems with data format conversion

#129 ultraypy closed 2 months ago
2
image registration failed

#128 qiuyixmm opened 2 months ago
4
Error detected in HDF5 (1.12.3) thread 0

#127 joweihsieh closed 2 months ago
5
metaclass conflict when running SAW_7.1.sif

#126 YiqianGu closed 2 months ago
2
Number of MMP reads exceeds the threshold

#125 reyvnth closed 1 month ago
2
Can't pull the image because dockerhub has been close

#124 feeisnotfree closed 2 months ago
6
Bad magic number in .pyc file

#123 aadimator closed 3 months ago
1
pandas is incompatible with numpy < 1.20.3

#122 YiqianGu closed 3 months ago
3
fastq-SE segmentation error

#121 YiqianGu closed 3 months ago
2
Multiomics analysis dotplot_RNA

#120 WeijiaSu opened 3 months ago
2
errors in cell cluster for proteins

#119 WeijiaSu closed 3 months ago
0
What does "cell bin" mean?

#118 Zhouchlei opened 4 months ago
2
register issue

#117 Wooseok1114 opened 4 months ago
1
Fata error, sequence contains control characters

#116 iichelhadi closed 4 months ago
2
OSError {Errno 30] related to write errcode.log during the step 03.register.

#115 wzhang42 opened 4 months ago
6
Test data "SS200000135TL_D1_v4_brain" does not have .ipr file ?

#114 Zhouchlei closed 4 months ago
4
Test data "SS200000135TL_D1_v4_brain" does not have .ipr file ?

#113 Zhouchlei closed 4 months ago
0
Did SAW 7.1 use stereopy to perform cell segmentation?

#112 yemao701 opened 4 months ago
3
error in report step v6.0

#111 niexiaoqing opened 4 months ago
1
Ask for GEM file format description

#110 jphe opened 4 months ago
1
Matrix representation problem

#109 X7xf opened 4 months ago
1
subsamplig

#108 BioRB closed 2 weeks ago
1
Question in mapping: [malloc(): memory corruption]

#107 yzhirui opened 4 months ago
3
cannot download SAW from DockerHub

#106 ruiliphy opened 4 months ago
1
Adding bin id tags to reads in bam file

#105 Ed2uiz closed 4 months ago
5