akoyabio phenoptrReports issues

akoyabio / phenoptrReports

Create analysis reports from inForm data.

https://akoyabio.github.io/phenoptrReports

zlib License

15 stars 7 forks source link

issues

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PhenoptrReports run issue?

#64 nmcr05 opened 3 months ago
1
H-Score report fix

#63 christianrickert opened 1 year ago
0
Mean of top 20/Bottom 10% Error in phenoptr::field_column

#62 YadrielMB opened 1 year ago
0
Mean of top 20/Bottom 10% not loading explorer

#61 jpo-costa opened 1 year ago
2
Issues with temp files during workbook generation

#60 christianrickert closed 2 years ago
3
phenoptrReports package does not install with R version 4.2.0

#59 shberry1998 closed 2 years ago
1
Number of component is not same for Unmixing Quality Report

#58 SDJ7007 closed 2 years ago
2
For Top 20 / Bottom 10, request option to aggregate by field

#57 ccoltharp-Akoya closed 2 years ago
1
could not find function "find_common_prefix"

#56 christianrickert closed 2 years ago
2
Merge seg files bug

#55 JpGuegan closed 2 years ago
6
One project is gettting consolidated but not the second.

#54 SDJ7007 closed 2 years ago
2
Consolidated and Summary Report- Warning

#53 SDJ7007 closed 2 years ago
3
PhenoprReports update-spatial map viewer not working

#52 aakoya closed 3 years ago
5
Spatial Map Viewer Error

#51 cduerrschmid closed 3 years ago
1
Component levels report fails if "Export data from pairs plots" is checked

#50 AB-Kent closed 3 years ago
0
Support multiple H-Scores in analysis app

#49 AB-Kent closed 3 years ago
0
Allow consolidation and analysis when no phenotypes are defined

#48 AB-Kent closed 3 years ago
0
Mean expression fails when phenotype includes a formula

#47 AB-Kent closed 3 years ago
0
Charts word doc is empty and spatial viewer does not load

#46 cduerrschmid closed 3 years ago
3
Data Consolidation creates duplicate columns instead of merging

#45 cduerrschmid closed 3 years ago
1
UpSetR error

#44 jpo-costa closed 3 years ago
1
Identifying background/noise from signal

#43 Jeff87075 closed 3 years ago
3
Using Phenoptr reports with non-Vectra TIFFs

#42 man154 closed 3 years ago
1
cannot install rtree package in R 4.0

#41 Athanasios72 closed 3 years ago
8
Consolidate and summarize

#40 tanerhf closed 4 years ago
2
Report nearest neighbors and count within for individual tissue categories and all categories together

#39 AB-Kent closed 4 years ago
0
R session is aborted when spatial map viewer cannot find requested phenotype in image

#38 gcakoyabio closed 4 years ago
2
Touching cells does not display correct segmentation maps.

#37 gcakoyabio closed 4 years ago
2
Include expression-based phenotype columns to count_within.txt and nearest_neighbors.txt

#36 ccoltharp-Akoya closed 4 years ago
4
Count within totals across tissue categories are wrong

#35 AB-Kent closed 4 years ago
0
Analysis app : NAs introduced by coercion

#34 AB-Kent closed 4 years ago
1
Fatal error from `write_h_score_sheet`: Error: Names must be unique

#33 AB-Kent closed 4 years ago
0
Analysis addin fails if 'Total Cells' is the only phenotype

#32 AB-Kent closed 4 years ago
0
Merge addin corrupts files with comma as decimal separator

#31 AB-Kent closed 4 years ago
0
Report H-Score for specific phenotypes

#30 AB-Kent closed 4 years ago
0
Folder choosers don't show network folders

#29 AB-Kent closed 4 years ago
0
File Akoya.png not found in resource path

#28 drstitch closed 4 years ago
3
Terminology: Combine markers to create phenotypes

#27 AB-Kent opened 5 years ago
0
Spatial map viewer doesn't recognize component images

#26 HAL4500 closed 5 years ago
5
Columns have characters values error

#25 michaelmooreny closed 5 years ago
7
package load error + charachter in column

#24 michaelmooreny closed 5 years ago
1
First time use of PhenoptrReports errors

#23 michaelmooreny closed 5 years ago
5
Export detailed data for spatial views

#22 AB-Kent closed 5 years ago
1
Component levels report by slide

#21 AB-Kent opened 5 years ago
0
Various errors

#20 EKopin closed 5 years ago
3
Unmixing quality report fails if path has '#' character

#19 ccoltharp-Akoya opened 5 years ago
2
Support distance measures in analysis addin

#18 AB-Kent closed 5 years ago
3
Phenotypes not registering in consolidation file

#17 EKopin closed 5 years ago
3
Spatial map viewer fails with older inForm data

#16 AB-Kent closed 5 years ago
1
Incorrect number of cells in stroma tissue category

#15 rvanguri closed 5 years ago
4