issues
search
broadinstitute
/
ichorCNA
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
GNU General Public License v3.0
158
stars
88
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
segments with deletions become 'red' colored
#85
hw538
opened
3 years ago
4
I have got an error while running an example code
#84
chantisakee
opened
3 years ago
9
Removal of chromosomal regions before calling the CNVs/ performing the analysis
#83
samhitapn
opened
3 years ago
1
The style does not have a compatible entry for the species supported by
#82
grenaud
opened
3 years ago
2
Number of samples for custom PON
#81
shahmj
opened
3 years ago
1
Issue with seqlevelsStyle
#80
samhitapn
closed
3 years ago
1
Can ichorCNA for tumor samples
#79
jfrigola
opened
3 years ago
1
Is ichoCNA used only for tumor-normal mode?
#78
ArshiyaG
opened
3 years ago
3
The style does not have a compatible entry for the species supported by Seqname
#77
ury
opened
4 years ago
5
Error: could not find function "getSeqInfo"
#76
heqisun
opened
4 years ago
2
Understanding .seg and .cna.seg output files
#75
CuriusScientist
closed
4 years ago
2
After I installed it , Script directory not find
#74
zhangyafeng1
opened
4 years ago
2
specified the package name for function HMMsegment
#73
hw538
closed
3 years ago
0
unable to find an inherited method for function ‘NSBS’ for signature ‘"CompressedIntegerList"
#72
hw538
closed
4 years ago
3
RFC: Investigate the use of query length size selection to improve sensitivity
#71
lbeltrame
opened
4 years ago
1
mappability threshold for correctReadCounts
#70
mr-james-ireland
opened
4 years ago
0
Create MAP files and GC files for exon
#69
StevenIg
opened
4 years ago
0
Understanding ichorCNA output
#68
CuriusScientist
closed
4 years ago
4
Documentation: explain how to extract information from the alternative solutions
#67
lbeltrame
closed
4 years ago
1
rds files compatibility
#66
CuriusScientist
opened
4 years ago
2
Display ChrY in plots
#65
Haldrup
opened
4 years ago
9
How to specifiy sample paired normal control in snakemake pipeline
#64
TendoLiu
opened
4 years ago
2
Downsampling method of ichorCNA benchmarking
#63
yuanzhao0502
opened
4 years ago
1
Annotate the cna file with gene name
#62
TendoLiu
opened
4 years ago
0
Error in parse_args(parseobj)
#61
vipultodarwal
closed
4 years ago
1
Where is runIchorCNA.R installed to when using R CMD INSTALL?
#60
callunity
closed
4 years ago
4
Error in rho[, 1] : subscript out of bounds
#59
Dries-B
closed
4 years ago
5
Error while running with GenomeInfoDb_1.20.0 installed from tar
#58
patidarr
closed
5 years ago
11
Fail to plot analysis for only one chr
#57
mpierrejean
closed
5 years ago
2
fail to use getSeqInfo with library(ichorCNA)
#56
mpierrejean
closed
5 years ago
0
runIchorCNA.R failing when passing bed file
#55
MUppal
opened
5 years ago
2
Typo in utils.R
#54
MUppal
closed
5 years ago
0
Can ichorCNA be used for analyzing 150 bp paired-end reads?
#53
ciciyun
closed
5 years ago
1
R installation broken
#52
mheskett
closed
5 years ago
6
Conda recipe is broken on linux
#51
mheskett
opened
5 years ago
1
Error: RangedData objects are deprecated and the coercion method from data.fram or DataTable to RangedData is now defunct.
#50
Isy89
opened
5 years ago
9
Running example file,parameters
#49
neethav
opened
5 years ago
0
Update release after bugfix?
#48
mmterpstra
closed
5 years ago
2
Which UCSC hg19 mappability BigWig file should be used for different bins?
#47
wisekh6
closed
5 years ago
2
How to create gc and map reference for mouse?
#46
yuanzhao0502
opened
5 years ago
3
Error in rep.int(rows, nr) : invalid 'times' value
#45
lbeltrame
opened
5 years ago
3
Detailed output of non-primary solutions
#44
ivlachos
opened
5 years ago
2
Confusion about light green or dark green lines/dots
#43
peneder
closed
5 years ago
4
Qustions about bins size and coverage
#42
yuanzhao0502
opened
5 years ago
1
Correct integer copy number for high-level events and for chrX (males)
#41
gavinha
closed
5 years ago
0
Error when generating PoN
#40
andreykoch
closed
5 years ago
3
Error in Optimization
#39
sengoku93
opened
5 years ago
2
Scripts will be installed with package
#38
ryanrichholt
opened
5 years ago
4
incomplete ichorCNA documentation
#37
rahulram70
opened
5 years ago
0
Error in rep.int(rows, nr) : invalid 'times' value
#36
rahulram70
closed
5 years ago
0
Previous
Next