broadinstitute pooled-cell-painting-profiling-template issues

broadinstitute / pooled-cell-painting-profiling-template

:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines

BSD 3-Clause "New" or "Revised" License

2 stars 3 forks source link

issues

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add single_cell_by_guide to normalize

#33 ErinWeisbart closed 2 years ago
0
update documentation

#32 ErinWeisbart closed 3 years ago
0
handle erroring in comparment file checking

#31 ErinWeisbart closed 3 years ago
1
add configuration for skipping max number sites

#30 ErinWeisbart closed 3 years ago
0
remove fork instructions, add GH commit and S3 upload instructions

#29 ErinWeisbart closed 3 years ago
1
Image_metadata.tsv is too big

#28 gwaybio opened 3 years ago
1
Handle user-defined data splitting by batch, plate, and/or well

#27 gwaybio closed 3 years ago
0
Move plate_id to batch_id and enable customized analysis splits

#26 gwaybio closed 3 years ago
3
Update pycytominer version

#25 gwaybio closed 3 years ago
0
Ignore gzip timestamps in compressed output files

#24 gwaybio closed 3 years ago
0
Speed up process configuration

#22 gwaybio closed 3 years ago
1
Add image_col full info arg

#21 gwaybio closed 3 years ago
0
Add a `full_info` arg to image_cols in the options config

#20 gwaybio closed 3 years ago
0
Add exact_match_reads_col config in options.yaml

#19 gwaybio opened 3 years ago
0
process_configuration is very slow

#18 gwaybio closed 3 years ago
0
Update pycytominer version to ignore timestamp diffs in gz files

#23 gwaybio closed 3 years ago
0
Adding step 4.0 to WELD.md

#17 gwaybio closed 3 years ago
1
update READMEs for latest configuration

#16 ErinWeisbart closed 4 years ago
1
Update plate_id_folder handling

#15 ErinWeisbart opened 4 years ago
0
Updating repository documentation in main markdown files

#14 gwaybio closed 4 years ago
1
Hotfix config

#13 gwaybio closed 4 years ago
0
Updating welding logic

#12 gwaybio closed 4 years ago
0
Major configuration update

#11 gwaybio closed 4 years ago
4
Adding necessary profiling config option

#9 gwaybio closed 4 years ago
0
Enhanced Config System

#10 gwaybio opened 4 years ago
2
Conda environment install not working

#8 ErinWeisbart closed 4 years ago
2
Minor updates + clarifications for first release

#7 gwaybio closed 4 years ago
2
parse README

#6 ErinWeisbart closed 4 years ago
1
Adding the weld script, adding weld and environment documentation, and adding config files

#5 gwaybio closed 4 years ago
0
remove errant config option

#4 ErinWeisbart closed 4 years ago
2
adding config README

#3 ErinWeisbart closed 4 years ago
1
Adding conda environment

#2 gwaybio closed 4 years ago
1
Adding README with Usage Instructions

#1 gwaybio closed 4 years ago
1