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broadinstitute
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pooled-cell-painting-profiling-template
:hammer_and_wrench: Use me to version control Pooled Cell Painting data and processing pipelines
BSD 3-Clause "New" or "Revised" License
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add single_cell_by_guide to normalize
#33
ErinWeisbart
closed
2 years ago
0
update documentation
#32
ErinWeisbart
closed
2 years ago
0
handle erroring in comparment file checking
#31
ErinWeisbart
closed
2 years ago
1
add configuration for skipping max number sites
#30
ErinWeisbart
closed
2 years ago
0
remove fork instructions, add GH commit and S3 upload instructions
#29
ErinWeisbart
closed
2 years ago
1
Image_metadata.tsv is too big
#28
gwaybio
opened
2 years ago
1
Handle user-defined data splitting by batch, plate, and/or well
#27
gwaybio
closed
3 years ago
0
Move plate_id to batch_id and enable customized analysis splits
#26
gwaybio
closed
3 years ago
3
Update pycytominer version
#25
gwaybio
closed
3 years ago
0
Ignore gzip timestamps in compressed output files
#24
gwaybio
closed
3 years ago
0
Speed up process configuration
#22
gwaybio
closed
3 years ago
1
Add image_col full info arg
#21
gwaybio
closed
3 years ago
0
Add a `full_info` arg to image_cols in the options config
#20
gwaybio
closed
3 years ago
0
Add exact_match_reads_col config in options.yaml
#19
gwaybio
opened
3 years ago
0
process_configuration is very slow
#18
gwaybio
closed
3 years ago
0
Update pycytominer version to ignore timestamp diffs in gz files
#23
gwaybio
closed
3 years ago
0
Adding step 4.0 to WELD.md
#17
gwaybio
closed
2 years ago
1
update READMEs for latest configuration
#16
ErinWeisbart
closed
3 years ago
1
Update plate_id_folder handling
#15
ErinWeisbart
opened
3 years ago
0
Updating repository documentation in main markdown files
#14
gwaybio
closed
3 years ago
1
Hotfix config
#13
gwaybio
closed
3 years ago
0
Updating welding logic
#12
gwaybio
closed
3 years ago
0
Major configuration update
#11
gwaybio
closed
3 years ago
4
Adding necessary profiling config option
#9
gwaybio
closed
3 years ago
0
Enhanced Config System
#10
gwaybio
opened
3 years ago
2
Conda environment install not working
#8
ErinWeisbart
closed
3 years ago
2
Minor updates + clarifications for first release
#7
gwaybio
closed
3 years ago
2
parse README
#6
ErinWeisbart
closed
3 years ago
1
Adding the weld script, adding weld and environment documentation, and adding config files
#5
gwaybio
closed
3 years ago
0
remove errant config option
#4
ErinWeisbart
closed
3 years ago
2
adding config README
#3
ErinWeisbart
closed
3 years ago
1
Adding conda environment
#2
gwaybio
closed
4 years ago
1
Adding README with Usage Instructions
#1
gwaybio
closed
4 years ago
1