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callahantiff
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PheKnowLator
PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models
https://github.com/callahantiff/PheKnowLator/wiki
Apache License 2.0
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draft SPARQL endpoint
#83
bill-baumgartner
closed
3 years ago
2
Scripting prebuild notebooks
#81
callahantiff
closed
3 years ago
1
Create Notebook to Enable pkt use in Efforts like HuBMAP
#80
callahantiff
closed
3 years ago
1
✅ - Need pkt Build Framework Overview Figure
#79
callahantiff
closed
3 years ago
21
Fixes issue 64
#78
callahantiff
closed
3 years ago
1
Handling MESH-CHEBI Mappings
#77
callahantiff
closed
3 years ago
2
Fixes issue 66
#76
callahantiff
closed
3 years ago
1
Add a Codacy badge to README.rst
#75
codacy-badger
closed
3 years ago
0
Determine KG Baseline Format
#74
callahantiff
closed
3 years ago
1
Convert Ontology Cleaning Jupyter Notebook into Script
#73
callahantiff
closed
3 years ago
0
Convert Data Preprocessing Jupyter Notebook to Script
#72
callahantiff
closed
3 years ago
0
Add Baseline KG Embeddings To CI/CD
#71
callahantiff
closed
3 years ago
1
Configure Google Cloud Storage
#70
callahantiff
closed
3 years ago
3
Set-up SPARQL Endpoint
#69
callahantiff
closed
2 years ago
8
Setting Up and End-to-End CI/CD Framework
#68
callahantiff
opened
3 years ago
2
Preparing for ISMB Bio-Ontologies Task
#67
callahantiff
closed
3 years ago
2
Migrate from Travis CI to GitHub Actions
#66
callahantiff
closed
3 years ago
0
Coding: Add Jupyter Notebook to Dockerfile
#65
LeRicNet
opened
3 years ago
2
TODO: Update DOID nodes with MONDO Identifiers
#64
callahantiff
closed
3 years ago
0
Ontology swap
#63
callahantiff
closed
3 years ago
0
Enhancement: Improve Networkx MultiDiGraph Metadata
#62
callahantiff
closed
3 years ago
4
Other: Also use persistent RDFlib store for output graphs
#61
zmaas
opened
3 years ago
1
Other: Add sparse KG representation output
#60
callahantiff
closed
3 years ago
1
Owl nets bug
#59
callahantiff
closed
3 years ago
0
Add integer and identifiers to node metadata
#58
callahantiff
closed
3 years ago
6
Bug: Instance-based OWL-NETS build have anonymous nodes
#57
callahantiff
closed
3 years ago
1
Coding: Improve storage of original triples when running OWL-NETS
#56
callahantiff
closed
3 years ago
5
Verify KG Output File Types
#55
callahantiff
closed
3 years ago
1
TODO: Finalize KG Construction Survey
#54
callahantiff
closed
4 years ago
11
TODO: Move print statements to logging
#53
callahantiff
closed
3 years ago
1
Wiki: Update v2.0.0 data source hyperlinks
#52
callahantiff
closed
3 years ago
6
Cannot Apply OWLAPI Formatting to Very Large KGs
#51
callahantiff
closed
3 years ago
4
Handling Unicode Encoding Errors in Ontology Metadata
#50
callahantiff
closed
4 years ago
3
TODO: Export/Create Link to GCP Instance Template
#49
callahantiff
closed
3 years ago
2
Develop
#48
callahantiff
closed
3 years ago
1
Create Docker Container for Neo4J instance
#47
callahantiff
closed
2 years ago
5
Update Dockerfile
#46
callahantiff
closed
4 years ago
1
Publish code to PyPI
#45
callahantiff
closed
3 years ago
1
Adding docker
#44
callahantiff
closed
4 years ago
0
TODO: Publish Docker to Docker Hub
#43
callahantiff
closed
3 years ago
5
Adding docker
#42
callahantiff
closed
4 years ago
0
Adding docker
#41
callahantiff
closed
4 years ago
0
Multi-Stage Docker Build -- Not Runnable Outside of Container
#40
callahantiff
closed
4 years ago
1
TODO - Project Organization: Neo4J Pricing
#39
callahantiff
closed
3 years ago
2
TODO: Handle Redirects to PKT domain
#38
callahantiff
closed
4 years ago
1
TODO: Create YouTube PKT Video
#37
callahantiff
opened
4 years ago
1
HELP - Verifying README Content
#36
callahantiff
closed
4 years ago
8
CTD Data Source - CAPTCHA
#35
callahantiff
closed
4 years ago
1
Documentation updates
#34
callahantiff
closed
4 years ago
0
HELP - Verifying Wiki Content
#33
callahantiff
closed
4 years ago
14
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