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caporaso-lab
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sourcetracker2
SourceTracker2
BSD 3-Clause "New" or "Revised" License
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install fails on linux 64
#63
wdwvt1
closed
7 years ago
2
Add example commands from README.md to tests run by Travis
#62
wdwvt1
closed
7 years ago
0
test addition
#61
wdwvt1
closed
7 years ago
1
centralize metadata parsing
#60
gregcaporaso
closed
7 years ago
2
documentation errors
#59
wdwvt1
closed
7 years ago
0
memory leak
#58
wdwvt1
closed
7 years ago
3
add functions for comparing sourcetracker results
#57
gregcaporaso
closed
7 years ago
6
add Jensen-Shannon calculator for sources
#56
wdwvt1
closed
7 years ago
1
refactor `gibbs_sampler` to remove proportion calculation
#55
wdwvt1
closed
7 years ago
1
`gibbs` unintuitively fails if source and sink tables don't exactly match features
#54
wdwvt1
opened
7 years ago
14
TST: adds coveralls
#53
gregcaporaso
closed
7 years ago
5
Adding functionality to SourceTracker 2
#52
drscottkelley
closed
7 years ago
3
Major overhaul of internals
#51
wdwvt1
closed
7 years ago
19
Create QIIME2 plugin
#50
lkursell
opened
8 years ago
1
speed improvement with dictionary indexing
#49
wdwvt1
closed
7 years ago
3
resolve different default parameters
#48
gregcaporaso
closed
7 years ago
1
Issue46
#47
wdwvt1
closed
8 years ago
0
Unexpected behavior with null values in api call
#46
johnchase
closed
7 years ago
1
MemoryError with rarefaction
#45
mortonjt
closed
7 years ago
5
updates for 2.0.1 development cycle
#44
gregcaporaso
closed
8 years ago
0
REL: update version and install doc for release
#43
gregcaporaso
closed
8 years ago
0
Added defaults to _gibbs
#42
lkursell
closed
8 years ago
0
_gibbs fails on dataframes with floats
#41
lkursell
closed
7 years ago
4
Revert "modifications in preparation for first alpha release"
#40
lkursell
closed
8 years ago
2
parameterize mapping file values and column names
#39
gregcaporaso
closed
8 years ago
0
modifications in preparation for first alpha release
#38
gregcaporaso
closed
8 years ago
2
improve script testing approach
#37
gregcaporaso
opened
8 years ago
0
TST/MAINT
#36
gregcaporaso
closed
8 years ago
1
"Python not installed as framework"
#35
lkursell
opened
8 years ago
0
refactor discussion / what I think we need before release
#34
wdwvt1
closed
7 years ago
4
delay parameter
#33
wdwvt1
closed
7 years ago
2
Adds one-line call function and examples
#32
wdwvt1
closed
8 years ago
7
Create SourceTracker2 api
#31
johnchase
closed
7 years ago
4
initial (2.0.1) alpha release
#30
gregcaporaso
closed
7 years ago
2
migrate functionality that is in sourcetracker2_internal but not sourcetracker2
#29
gregcaporaso
closed
7 years ago
4
MAINT: fix skbio version range, flake8 fix
#28
gregcaporaso
closed
8 years ago
0
updated scikit-bio range
#27
gregcaporaso
closed
8 years ago
1
Investigate memoization for ConditionalProbability.calculate_cp_slice
#26
gregcaporaso
closed
7 years ago
3
Visualization of mixing probabilities
#25
gregcaporaso
closed
7 years ago
2
possible bug
#24
gregcaporaso
closed
7 years ago
2
Display verbose progress
#23
gregcaporaso
opened
8 years ago
2
check out use of Dufrêne-Legendre indicator species analysis
#22
gregcaporaso
closed
7 years ago
0
Small doc changes
#21
gregcaporaso
closed
8 years ago
0
ipcluster can remain open in some circumstances
#20
gregcaporaso
closed
5 years ago
4
better error message when passed an existing directory
#19
gregcaporaso
closed
7 years ago
0
Add "method 5"
#18
gregcaporaso
closed
8 years ago
0
More collapse methods for source samples
#17
gregcaporaso
opened
8 years ago
1
modifications to install instructions
#16
gregcaporaso
closed
8 years ago
2
Allow removal of 'contamination' sources from sink samples
#15
lkursell
opened
8 years ago
0
Automatic tuning of alphas & fit evaluation
#14
lkursell
opened
8 years ago
0
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