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caporaso-lab
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sourcetracker2
SourceTracker2
BSD 3-Clause "New" or "Revised" License
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MAINT: Makes compatible with latest pandas
#112
johnchase
closed
5 years ago
4
AttributeError: 'Series' object has no attribute 'applymap'
#111
rebelwebster
closed
5 years ago
2
`sourcetracker2 gibbs` generating empty output tables
#110
nick-youngblut
opened
5 years ago
3
KeyError: 'SourceSink'
#109
rebelwebster
closed
5 years ago
5
sourcetracker always got error even in sample data run
#108
chloelulu
opened
5 years ago
6
Mapping file or biom table passed contain no `source` samples.
#107
HeatherDeel-USDA
closed
6 years ago
4
Sourcetracker2 runs for 1m30s then all processes switch to 'Sleep' and hangs
#106
jfy133
closed
5 years ago
3
Dropping features not shared between sinks and sources
#105
lkursell
closed
6 years ago
3
OTUs contributing
#104
srithegreat
closed
6 years ago
4
MAINT: Set mpl backend for Travis testing
#103
jakereps
closed
6 years ago
0
BUG: Fixes broken build
#102
johnchase
closed
6 years ago
1
no such option: --per_sink_feature_assignments
#101
chloelulu
closed
5 years ago
1
warning in st2
#100
chloelulu
closed
6 years ago
1
multiple treads run
#99
chloelulu
closed
6 years ago
0
Hangup signal lost
#98
gfragiadakis
closed
5 years ago
2
add clear usage example for no source collapse
#97
wdwvt1
opened
6 years ago
0
make clear usage example for avoiding a source collapse with CLI
#96
wdwvt1
opened
6 years ago
0
per_sink_feature_assignments output
#95
lakarstens
opened
6 years ago
2
Error when trying to run ST2.
#94
mawij2002
closed
5 years ago
1
MAINT: Move plotting to _plot.py
#93
jakereps
closed
6 years ago
1
Possibly look into the Python builtin `multiprocessing` for parallelization?
#92
jakereps
closed
5 years ago
4
Drop `mpl.use` or move plotting out of the main `_sourcetracker.py` file
#91
jakereps
closed
6 years ago
0
DOC: Updated example in nb
#90
lkursell
closed
6 years ago
2
Autoc
#89
wdwvt1
opened
7 years ago
7
R version sourcetracker() error
#88
Riselya
closed
7 years ago
1
Address #45
#87
mortonjt
closed
7 years ago
5
Using leave-one-out with positional arguments
#86
lkursell
opened
7 years ago
2
Per_sink_feature_assignments not found
#85
dsouzamel
closed
4 years ago
12
install fails with old libpng
#84
wdwvt1
closed
7 years ago
1
Alternative mixing proportions algorithm
#83
lkursell
closed
6 years ago
3
add speedtest to CLI
#82
wdwvt1
opened
7 years ago
0
refactor `gibbs_sampler`
#81
wdwvt1
opened
7 years ago
0
~55% speed improvement
#80
wdwvt1
closed
7 years ago
6
42% runtime reduction by replacing np.random.choice
#79
wdwvt1
closed
7 years ago
2
42% runtime reduction by replacing np.random.choice
#78
wdwvt1
closed
7 years ago
0
Fixes missing test
#77
wdwvt1
closed
7 years ago
1
update readme
#76
wdwvt1
opened
7 years ago
1
TST/API: plotting function name change and testing
#75
gregcaporaso
closed
7 years ago
3
rename plot_mpm to mpm_heatmap
#74
gregcaporaso
closed
7 years ago
0
add test that calls the plot_mpm
#73
gregcaporaso
closed
7 years ago
0
improve `validate_gibbs_input`
#72
wdwvt1
opened
7 years ago
0
Api
#71
wdwvt1
closed
7 years ago
8
DOC/BLD: fixes #63
#70
gregcaporaso
closed
7 years ago
1
More, faster tests
#69
wdwvt1
closed
7 years ago
1
Issue 33
#68
wdwvt1
closed
7 years ago
1
Adds a consistency test
#67
wdwvt1
closed
7 years ago
4
various updates for 2.0.2
#66
gregcaporaso
closed
7 years ago
3
do we really need gibbs to be a subcommand?
#65
gregcaporaso
closed
7 years ago
2
ENH: adds API for comparing sourcetracker results
#64
gregcaporaso
closed
7 years ago
5
install fails on linux 64
#63
wdwvt1
closed
7 years ago
2
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