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cov-lineages
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pango-designation
Repository for suggesting new lineages that should be added to the current scheme
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JN.1+S:Q677H(67 seqs, 11 countries)
#2549
xz-keg
closed
3 months ago
3
JN.1.1.6 (456L) got S:346T (FLiRT spotted first by @Krosa1910, 10 Sequences ) and then S:T572I (TRIO) in South Australia (5)
#2548
FedeGueli
closed
6 months ago
3
JN.1.48+S:F456L branches, one designated JN.1.48.1 and LD.1, the other with Orf3a:S60F (43 seqs, 13 countries)
#2547
xz-keg
closed
2 months ago
37
LB.1 (JN.1.9 + FLiRT) with S:S31del (339) with a singlet with S:A475V (this subbranch spotted by @hynnspylor)
#2546
FedeGueli
closed
3 months ago
24
KT.1 (GE.1.2.1) sublineage with S:D>G253V and S:T739A
#2545
FedeGueli
closed
5 months ago
2
possible minor typo in lineage_notes.txt for KV.1
#2544
Mike-Honey
opened
6 months ago
2
JN.1.39+S:F456L mostly misplaced under JN.1.16 (456 seqs, 250 with S:R346T(designated JN.1.39.1), 16 with S:T572I and S:478Q)
#2543
xz-keg
closed
1 month ago
29
JN.1.11 (S:V1104L) got S:R346T being caught multiple times in GBW samples (119) and further gaining S:F59L (17)
#2542
FedeGueli
closed
2 months ago
8
Update lineage_notes.txt
#2541
Memorablea
closed
6 months ago
1
JN.1.4 with N:A35T, S:K150R and S:T572I growing in England (64 as of May 21)
#2540
FedeGueli
closed
4 months ago
2
Fix KV.1 Alias
#2539
Mydtlwn
closed
6 months ago
1
JN.1.18+S:F456V misplaced as JN.1.16.1+S:L456V(109 seqs, 19 countries)
#2538
xz-keg
closed
4 months ago
26
Update lineage_notes.txt
#2537
FedeGueli
closed
6 months ago
1
JN.1+S:A67V,N:T24I(25 seqs, 4 countries)
#2536
xz-keg
closed
2 months ago
6
Update lineage_notes.txt
#2535
FedeGueli
closed
6 months ago
1
JN.2+Orf1a:C3059S+S:L455S(77 seqs, 6 countries)
#2534
xz-keg
closed
2 months ago
1
Update lineage_notes.txt
#2533
FedeGueli
closed
6 months ago
1
Update lineage_notes.txt
#2532
FedeGueli
closed
6 months ago
5
JN.1+M:L46F+S:F456L(1922 seqs, 38 countries, 28% China, 22 with S:R346T, 51 with S:S31F, 6 with S:T22N)
#2531
xz-keg
closed
1 month ago
98
Another JN.1+S:S31F(119 seqs, 8 countries, 47 with S:R346T, 27 with FLiRT)
#2530
xz-keg
closed
1 month ago
11
XDD.1.1+S:R346T(10 seqs, 3 countries)
#2529
xz-keg
closed
6 months ago
1
JN.1 with N:Q240L, ORF9b:I5T, ORF1a:G519S (107 seq, May 3)
#2528
ryhisner
closed
1 month ago
1
Update lineage_notes.txt
#2527
Memorablea
closed
6 months ago
2
Update lineage_notes.txt
#2526
FedeGueli
closed
6 months ago
3
JN.1.8.1+S:H146Q(285 seqs, 8 countries)
#2525
xz-keg
closed
2 weeks ago
9
Update lineage_notes.txt
#2524
Memorablea
closed
6 months ago
3
JN.1.11.1+C6070T with FLiRT (346T+456L) and S:K187R (32 sequences, 10 countries )
#2523
FedeGueli
closed
5 months ago
8
JN.1.4 + A29799G (Octanucleotide mutation) (2057 seq, Aug 9)
#2522
ryhisner
closed
1 month ago
1
Another JN.1.11.1 lineage with FLiRT (456L 346T) 44 seqs , 6 countries with a branch with S:W258R (6)
#2521
FedeGueli
closed
5 months ago
13
JN.1.24.1 (346T) > FLiRT with S:F456L (101 seqs) emerged in Texas (NOTE: unreliable query)
#2520
FedeGueli
closed
3 months ago
20
Update lineage_notes.txt
#2519
Memorablea
closed
6 months ago
1
JN.1.4+ORF1a:T602I(41 out of 43 items are in China)
#2518
yanjin1234
closed
1 month ago
15
JN.1.4+Orf1a:T4087I,Orf1b:S1512N+S:F456L(304 seqs, 19 countries, 22 with S:T572I, 10 with S:R346T)
#2517
xz-keg
closed
1 month ago
40
JN.1*+S:Q677H and sublineage with S:S680F (transferred from issue 1326)
#2516
krosa1910
closed
6 months ago
1
JN.1.18+S:T250N(24 seqs, 8 countries, 6 with S:N556K)
#2515
xz-keg
closed
6 months ago
1
KU.2 (JN.1.30.1 + S:F456L) FLiRT sublineage got S:G213E and Orf1a:P2739L(19) in Uk, France, NZL
#2514
FedeGueli
closed
4 months ago
15
JN.1.28 + ORF1a:P1640L (= PLPro_P77L), S:T572I (113 seq. in 10 countries)
#2513
Fearuncle
closed
6 months ago
5
JN.1.4 with S:T572I in Canada and US (266 seqs)
#2512
FedeGueli
closed
3 months ago
7
JN.1.16 (456L) got S:R346T (35 Samples , 15 countries)
#2511
FedeGueli
closed
6 months ago
13
KP.1.1 (JN.1.11.1 + S:456L,1086R, S:R346T) with S:K182N (8) in multiple countries
#2510
FedeGueli
closed
6 months ago
15
Update lineage_notes.txt
#2509
Over-There-Is
closed
7 months ago
2
JN.1.7 with ORF1a:H3395Y (1467 seq, Aug 9)
#2508
ryhisner
closed
1 month ago
0
Update lineage_notes.txt
#2507
FedeGueli
closed
7 months ago
1
XDP+Orf1a:H388Y,L397P, S:E1092D (73 seqs, 6 countries, 6 with S:V1104L)
#2506
xz-keg
closed
6 months ago
2
JQ.2 (BA.2.86.3 + S:R346T ) got S:L455S in South Africa - 3% prevalence in February (18 Samples)
#2505
FedeGueli
closed
6 months ago
11
JN.1.4 plus S:T572I ( 322 seqs)
#2504
FedeGueli
closed
3 months ago
7
EG.5/(JN.1+S:I1216V) recombinant (30 seqs, 8 countries)
#2503
xz-keg
closed
5 months ago
3
XDU: XBB.1.16/BA.2.86.1 recombinant, 19 samples from Japan
#2502
JosetteSchoenma
closed
6 months ago
5
BA.2.86.1/EG.5.1* (or XDT or or XDL or EG.1 or ?) 32 samples 6 countries
#2501
JosetteSchoenma
opened
7 months ago
3
KV.2 (JN.1.4.5 + S:T572I ) with S:F456L (5,Mississippi)
#2500
FedeGueli
closed
5 months ago
8
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