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pango-designation
Repository for suggesting new lineages that should be added to the current scheme
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JN.1.1+S:S31F+S:R346T(Designated LC.1)+S:F456L(3 seqs, 2 countries)
#2490
aviczhl2
closed
2 months ago
9
JN.1.1/HW.1.1 (XBC.1.6.3.1.1) recombinant, Finland, 6 samples
#2489
JosetteSchoenma
opened
5 months ago
5
JN.1 with S:K444R, S:Y453F (14 seq, 13 Brazil, 1 USA; Feb 15)
#2488
ryhisner
closed
4 months ago
16
JN.1.4.3 (S:T572I) with S:R346T (66-US)
#2487
FedeGueli
closed
4 months ago
13
Update lineage_notes.txt
#2486
FedeGueli
closed
4 months ago
2
XDT: BA.2.86.4/GK.1 recombinant from Ireland, England and Scotland, 28 samples
#2485
JosetteSchoenma
closed
4 months ago
6
8 new BA.2 sequences with private mutations from south africa (September-October 2023)
#2484
dikeledik
closed
5 months ago
36
JN.1.4 + ORF9b:P10F (354 seq in 45 countries as April 24)
#2483
Fearuncle
opened
5 months ago
0
JN.1.5 with C5986T and ORF1a:P1921S first detected in Ticino, Switzerland (231 GISAID seqs as of 2024-01-30; 19 countries, 4 continents)
#2482
alurqu
closed
4 months ago
3
BA.2.86.1/FL.15.1.1 recombinant (25 seqs, 10 countries, 4 with S:A475V)
#2481
aviczhl2
closed
5 months ago
3
HK.13.2+Orf1b:T1178A, S:T250I,N:T379I(106 seqs, 12 countries, 2% Greece)
#2480
aviczhl2
closed
4 months ago
0
Stepwise GK.1.10+S:A475V(Designated GK.1.10.1)+S:Y200C(43 seqs,2 countries)+S:L5F,N450D(20 seqs, 2 countries)
#2479
aviczhl2
closed
4 months ago
3
HK.3/XBB.2.3 recombinant(67 seqs, 2 countries)
#2478
aviczhl2
closed
3 months ago
2
JD.1.1.1/JN.1.1 recombinant(53 seqs, 4 countries, 11% Brazil)
#2477
aviczhl2
closed
5 months ago
9
JN.1.1+S:V1264L(92 seqs, 15 countries)
#2476
aviczhl2
closed
4 months ago
0
JN.1.38+Orf3a:G100S+S:G35S(342 seqs, 8 countries, 15 with S:R346T)
#2475
aviczhl2
opened
5 months ago
9
BA.2.86.1/(anything with Orf9b:I5T) recombinant(53 seqs, 12 countries)
#2474
aviczhl2
closed
2 months ago
4
HV.1* with S:T573I (60 seqs at 02-06)
#2473
krosa1910
closed
4 months ago
2
XBB.1.16.6/HV.1.2 Sandwich Recombinant (35 sequences, CA 30, US 5)
#2472
Over-There-Is
closed
3 months ago
0
JN.1 + S:N185S(105 seq, 12 countries)
#2471
DoropFan
closed
3 months ago
7
XBB.2.3.3 Sublineage w/new S2' FCS—S:N450D, S:K478R, S:P812R, S:V1264L + 4x ORF1ab (6 countries, 48 seq, Jan 21)
#2470
ryhisner
opened
5 months ago
1
XBB.1.16.6 with S:K304N (151 seqs, 12 countries)
#2469
NkRMnZr
closed
2 weeks ago
0
HK.27/anything recombinant (461 seqs, 24 countries, 434 with Flip)
#2468
aviczhl2
closed
2 months ago
1
BUG: many sequence designations need to be updated to child lineages (e.g. BQ.1.3 --> BQ.1.3.2)
#2467
AngieHinrichs
opened
5 months ago
0
Remove 2339 names that map to seqs on multiple lineage branches
#2466
AngieHinrichs
closed
5 months ago
3
JN.1.22 + ORF1a:G445V (1309)
#2465
Fearuncle
opened
5 months ago
4
JN.1 with S:A1087S > S:R346T > S:F59S [17 with 346, US east coast + 1 Canada]
#2464
corneliusroemer
closed
4 months ago
2
GJ.1.2/HV.1 recombinant(50 seqs, 6 countries)
#2463
aviczhl2
closed
5 months ago
2
JN.1.4 + S:N185D ( 293 sequences, 8 countries)
#2462
FedeGueli
closed
5 months ago
4
JN.1 +Orf3a:L85F + ORF1a:T2152I +S:T572I (650 ). With a S:F456L sub-branch (384) with Multiple branches of interest: 1) R346T Branch (62) 2) S:S60P,S:W64L branch (23) 3) Orf9b:E7V branch (44)
#2461
FedeGueli
closed
10 hours ago
26
Update lineage_notes.txt
#2460
Over-There-Is
closed
5 months ago
2
HK.26 with ORF3a:L52I and S:T478R (52 seqs, mainly in Finland, 12 countries)
#2459
NkRMnZr
closed
2 weeks ago
3
HK.30 with S:T478R (157 seqs, mainly in Russia, 6 countries)
#2458
NkRMnZr
closed
2 weeks ago
5
add 5 autorefs from main page and 49 from lineage_proposals
#2457
aviczhl2
closed
5 months ago
1
KB.2 with ORF3a:T175I and S:A475V (48 seqs, mainly in South Korea, 4 countries)
#2456
NkRMnZr
closed
2 weeks ago
0
GK.1.1.1 with ORF1b:A647S (nsp12_A656S), S:F157L and S:N450D (57 seqs, 7 countries)
#2455
NkRMnZr
closed
1 month ago
6
FU.2 with ORF1b:F2309L (nsp15_F258L, ORF8:A65V, ORF1a:L349F (nsp2_L169F) and S:E554K (215 seqs, mainly in Mexico and USA, 12 countries)
#2454
NkRMnZr
closed
1 month ago
1
HK.3.2 sublineage with S:L216F, S:E554K(42 sequences, 12 countries)
#2453
Over-There-Is
opened
5 months ago
4
JN.1+S:H1058Y(122 seqs, 15 countries)
#2452
aviczhl2
closed
5 months ago
4
JN.1.4/FL.15 recombinant(32 seqs, 2 countries)
#2451
aviczhl2
closed
5 months ago
1
JN.1+S:T95I(27 seqs, 8 countries)
#2450
aviczhl2
closed
6 months ago
2
BA.2.86.1+S:T95I(31 seqs, 11 countries)
#2449
aviczhl2
closed
4 months ago
3
XDN: JN.1.1/JD.1* or XCP recombinant(37 seqs, 2 countries)
#2448
aviczhl2
closed
5 months ago
13
Possible new JN.1.X circuling with DELETION 28254 (ORF8:I121-)
#2447
OrsonMM
closed
1 month ago
1
JN.1+S:V1104L emerging in India(Designated JN.1.11, 16 and 5 countries with Orf1a:T2283I and S:F456L )
#2446
aviczhl2
closed
6 months ago
8
JN.3+N:H300Y(57 seq, 12 countries) and further S:F456V(23 seq, 8 countries)
#2445
Over-There-Is
closed
5 months ago
2
Update lineage_notes.txt
#2444
FedeGueli
closed
6 months ago
1
Withdraw lineage KD.5
#2443
AngieHinrichs
closed
6 months ago
1
JN.2+S:V193L(92 seqs, 16 countries)
#2442
aviczhl2
closed
6 months ago
3
FL.15.1.1 + ORF1a:F1571L (298)
#2441
Fearuncle
closed
5 months ago
1
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