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pango-designation
Repository for suggesting new lineages that should be added to the current scheme
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JN.1+S:A67V,N:T24I(14 seqs, 4 countries)
#2536
aviczhl2
opened
3 months ago
5
Update lineage_notes.txt
#2535
FedeGueli
closed
3 months ago
1
JN.2+Orf1a:C3059S+S:L455S(77 seqs, 6 countries)
#2534
aviczhl2
opened
3 months ago
0
Update lineage_notes.txt
#2533
FedeGueli
closed
3 months ago
1
Update lineage_notes.txt
#2532
FedeGueli
closed
3 months ago
5
JN.1+M:L46F+S:F456L(1356 seqs, 25 countries, 28% China, 8 with S:R346T)
#2531
aviczhl2
opened
3 months ago
74
Another JN.1+S:S31F(111 seqs, 7 countries, 39 with S:R346T, 20 with FLiRT)
#2530
aviczhl2
opened
3 months ago
10
XDD.1.1+S:R346T(10 seqs, 3 countries)
#2529
aviczhl2
closed
3 months ago
1
JN.1 with N:Q240L, ORF9b:I5T, ORF1a:G519S (107 seq, May 3)
#2528
ryhisner
opened
3 months ago
1
Update lineage_notes.txt
#2527
Memorablea
closed
3 months ago
2
Update lineage_notes.txt
#2526
FedeGueli
closed
3 months ago
3
JN.1.8.1+S:H146Q(264 seqs, 7 countries)
#2525
aviczhl2
opened
3 months ago
3
Update lineage_notes.txt
#2524
Memorablea
closed
3 months ago
3
JN.1.11.1+C6070T with FLiRT (346T+456L) and S:K187R (32 sequences, 10 countries )
#2523
FedeGueli
closed
2 months ago
8
JN.1.4 + A29799G (Octanucleotide mutation) (1979 seq, May 11)
#2522
ryhisner
opened
3 months ago
1
Another JN.1.11.1 lineage with FLiRT (456L 346T) 44 seqs , 6 countries with a branch with S:W258R (6)
#2521
FedeGueli
closed
2 months ago
13
JN.1.24.1 (346T) > FLiRT with S:F456L (83 seqs) likely emerged in Texas
#2520
FedeGueli
closed
3 weeks ago
15
Update lineage_notes.txt
#2519
Memorablea
closed
3 months ago
1
JN.1.4+ORF1a:T602I(41 out of 43 items are in China)
#2518
yanjin1234
opened
3 months ago
8
JN.1.4+Orf1a:T4087I,Orf1b:S1512N+S:F456L(259 seqs, 18 countries, 12 with S:T572I)
#2517
aviczhl2
opened
3 months ago
21
JN.1*+S:Q677H and sublineage with S:S680F (transferred from issue 1326)
#2516
krosa1910
closed
3 months ago
1
JN.1.18+S:T250N(24 seqs, 8 countries, 6 with S:N556K)
#2515
aviczhl2
closed
3 months ago
1
KU.2 (JN.1.30.1 + S:F456L) FLiRT sublineage got S:G213E and Orf1a:P2739L(19) in Uk, France, NZL
#2514
FedeGueli
closed
1 month ago
14
JN.1.28 + ORF1a:P1640L (= PLPro_P77L), S:T572I (113 seq. in 10 countries)
#2513
Fearuncle
closed
3 months ago
5
JN.1.4 with S:T572I in Canada and US (266 seqs)
#2512
FedeGueli
closed
2 weeks ago
7
JN.1.16 (456L) got S:R346T (35 Samples , 15 countries)
#2511
FedeGueli
closed
3 months ago
13
KP.1.1 (JN.1.11.1 + S:456L,1086R, S:R346T) with S:K182N (8) in multiple countries
#2510
FedeGueli
closed
3 months ago
15
Update lineage_notes.txt
#2509
Over-There-Is
closed
4 months ago
2
JN.1.7 with ORF1a:H3395Y (1031 seq, May 3)
#2508
ryhisner
opened
4 months ago
0
Update lineage_notes.txt
#2507
FedeGueli
closed
4 months ago
1
XDP+Orf1a:H388Y,L397P, S:E1092D (73 seqs, 6 countries, 6 with S:V1104L)
#2506
aviczhl2
closed
3 months ago
2
JQ.2 (BA.2.86.3 + S:R346T ) got S:L455S in South Africa - 3% prevalence in February (18 Samples)
#2505
FedeGueli
closed
3 months ago
11
JN.1.4 plus S:T572I ( 322 seqs)
#2504
FedeGueli
closed
2 weeks ago
7
EG.5/(JN.1+S:I1216V) recombinant (30 seqs, 8 countries)
#2503
aviczhl2
closed
2 months ago
3
XDU: XBB.1.16/BA.2.86.1 recombinant, 19 samples from Japan
#2502
JosetteSchoenma
closed
3 months ago
5
BA.2.86.1/EG.5.1* (or XDT or or XDL or EG.1 or ?) 32 samples 6 countries
#2501
JosetteSchoenma
opened
4 months ago
2
KV.2 (JN.1.4.5 + S:T572I ) with S:F456L (5,Mississippi)
#2500
FedeGueli
closed
2 months ago
8
add_3_autoref_from_main_and_10_from_lineage_proposals
#2499
aviczhl2
closed
4 months ago
1
JN.1+C21762T(S:A67V) (36 sequences, at least 7 countries)
#2498
yanjin1234
opened
4 months ago
37
XDQ+S:A475V(41 seqs, 6 countries, 17% South Korea)
#2497
aviczhl2
closed
4 months ago
4
GE.1.2 with S:R>S408N emerged in Kenya featuring the Ryan's complete deletion of Orf7ab/Orf8 (25 seqs) 30% of sequences in Kenya after Jan 16
#2496
FedeGueli
closed
3 months ago
3
JN.1.8 Plus S:R346T (34 sequences, 8 countries including 3 different African countries)
#2495
FedeGueli
closed
3 months ago
3
JN.1.42 got S:R346T emerged in South America 65 seqs now with a FLiRT Branch (3seqs)
#2494
FedeGueli
closed
1 month ago
6
JN.1.4.7 (Orf3a:G18D) with S:R346T, 144 Sequences, 19 countries including 5 different African countries(20% in DRC-Congo in 2024, 5% in South Africa in March) with S:F456V (21)
#2493
FedeGueli
closed
1 month ago
19
JN.1.1.5 (Original proposal) with a S:F456L /Orf9b:T72I sublineage (9 samples)
#2492
FedeGueli
closed
4 months ago
7
JN.1+S:T307I(151 seqs, 17 countries)
#2491
aviczhl2
closed
4 days ago
3
JN.1.1+S:S31F+S:R346T(Designated LC.1)+S:F456L(3 seqs, 2 countries)
#2490
aviczhl2
closed
2 months ago
9
JN.1.1/HW.1.1 (XBC.1.6.3.1.1) recombinant, Finland, 6 samples
#2489
JosetteSchoenma
opened
4 months ago
5
JN.1 with S:K444R, S:Y453F (14 seq, 13 Brazil, 1 USA; Feb 15)
#2488
ryhisner
closed
4 months ago
16
JN.1.4.3 (S:T572I) with S:R346T (66-US)
#2487
FedeGueli
closed
4 months ago
13
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