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pango-designation
Repository for suggesting new lineages that should be added to the current scheme
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JN.1+S:F456L on C6145T branch (79 seqs, 9 countries)
#2585
aviczhl2
opened
1 month ago
4
JN.1 + S:F456L + S:V407i (37 seqs, Spain)
#2584
Sinickle
opened
1 month ago
15
JN.1.11.1 + C5467T got FLiRT (73)
#2583
FedeGueli
opened
1 month ago
5
JN.1 FViRT (346T+456V) with S:G181R, Orf3a:Q213K and PLPro_T75I from Singapore (8 sequences)
#2582
FedeGueli
closed
1 month ago
2
JN.1+S:F456L on C4795T branch (114 seqs, 14 countries)
#2581
aviczhl2
closed
1 month ago
5
KP.1.1+S:S31del(46 seqs, 11 countries)
#2580
aviczhl2
closed
1 month ago
7
KP.3+N:204P,Orf9b:P3H(117 seqs, 7 countries, 1 with S:A475V)
#2579
aviczhl2
closed
1 month ago
5
JN.1+S:F456L on C23683T branch(136 seqs, 7 countries)
#2578
aviczhl2
opened
1 month ago
4
JN.1.4+S:F456L(250 seqs, 15 countries)
#2577
aviczhl2
opened
1 month ago
5
Another JN.1+S:1143F(20 seqs, 6 countries)
#2576
DailyCovidCases
closed
3 weeks ago
3
KP.2.3+S:S31del(148 seqs, 21 countries, 5 with S:A475V)
#2575
aviczhl2
closed
1 month ago
10
BA.2.86.2+S:S155I (26 seqs, 8 countries)
#2574
aviczhl2
closed
1 week ago
2
Undesignated S:V1264L lineage in JN.1 (271 Samples, 18 Countries)
#2573
FedeGueli
closed
1 month ago
2
JN.1 + S:V1229I emerged in Russia - 10% after March 1 in St Petersburg region (126 seqs )with a branch with S:T572I (9)
#2572
FedeGueli
closed
1 month ago
1
JN.1 + S:K679R emerged in Malaysia(147 samples) with a sublineage with S:F456L in South Korea (25) representing around 10% of samples collected in May there
#2571
FedeGueli
closed
1 week ago
3
JN.1+Orf1b:S638I+Orf9b:R47H(69 seqs, 7 countries, 13 with S:G72E)
#2570
aviczhl2
opened
2 months ago
3
JN.1+Orf1a:S3244L+S:G261R(85 seqs, 9 countries, 22 with S:T572I)
#2569
aviczhl2
opened
2 months ago
0
KP.5 (JN.1.11.1 + S:T572I) with S:R346T (25) > TRIO
#2568
FedeGueli
opened
2 months ago
2
JN.1.18.4 (JN.1.18+FLiRT+S:L492L+Orf6:I60T) with S:F1103S (20 on Gisaid)
#2567
FedeGueli
opened
2 months ago
15
Another JN.1.11.1 FLiRT lineage with one FLiRT>Trio Sequence
#2566
FedeGueli
closed
2 months ago
1
New FLiRT JN.1 with 4 spike mutations (S:S71F,R346T,F456L H1101Y), 18 sequences Uk, Canada
#2565
FedeGueli
closed
3 weeks ago
5
New JN.1 + S:T572I sublineage in Australia, Canada and New Zealand (209 seqs - Australia and New Zealand) with a sublineage with S:G482S (5 ,Aus NZL)
#2564
FedeGueli
opened
2 months ago
7
JN.1.39 + S:R346T (29 sequences) with a FLiRT branch (2)
#2563
FedeGueli
closed
1 month ago
1
Another JN.1.11.1 sublineage got FLiRT after Orf1b:A2143V (NSP15_A92V) 45 sequences
#2562
FedeGueli
opened
2 months ago
8
Update lineage_notes.txt
#2561
FedeGueli
closed
2 months ago
1
JN.1.18 + Orf1a:N2147S (280) with three FLiRT sublienages (FLiRT1+S:K679R= 69 / FliRT2 = 46) and one FViRT sublineage(50)
#2560
FedeGueli
closed
1 day ago
22
XDK+Orf1a:T708I, S:F456L(20 seqs, 2 countries, 11 with S:A260V)
#2559
aviczhl2
closed
1 month ago
1
KP.1+Orf8:F3S(105 seqs, 5 countries, 3 with S:R346T)
#2558
aviczhl2
opened
2 months ago
1
JN.1.1.6 FLiRT branch sibling of KZ.1.1 (44 seqs)
#2557
FedeGueli
closed
1 week ago
11
JN.1.13.1+Orf9b:A75V(25 seqs, 2 countries)
#2556
aviczhl2
closed
2 months ago
1
JN.1+C4777T+S:F456L(84 seqs, 16 countries) with S:R346T(36 seqs) and S:R346I( 20 seqs) misplaced under JN.1.16 and JN.1.16.1
#2555
aviczhl2
closed
2 months ago
5
JN.1.39 + T111C [5' UTR] (469 seq, Apr 6)
#2554
ryhisner
opened
2 months ago
14
add_1_from_main_31_from_lineage_proposal
#2553
aviczhl2
closed
2 months ago
1
Update lineage_notes.txt
#2552
Over-There-Is
closed
2 months ago
1
Update lineage_notes.txt and alias_key.json
#2551
Over-There-Is
closed
2 months ago
1
Update lineage_notes.txt
#2550
FedeGueli
closed
2 months ago
1
JN.1+S:Q677H(67 seqs, 11 countries)
#2549
aviczhl2
closed
2 days ago
3
JN.1.1.6 (456L) got S:346T (FLiRT spotted first by @Krosa1910, 10 Sequences ) and then S:T572I (TRIO) in South Australia (5)
#2548
FedeGueli
closed
3 months ago
3
JN.1.48+S:F456L branches, JN.1.48.1 and Sibling branch of JN.1.48.1 with Orf3a:S60F (28 seqs, 10 countries)
#2547
aviczhl2
opened
3 months ago
35
LB.1 (JN.1.9 + FLiRT) with S:S31del (339) with a singlet with S:A475V (this subbranch spotted by @hynnspylor)
#2546
FedeGueli
closed
3 weeks ago
24
KT.1 (GE.1.2.1) sublineage with S:D>G253V and S:T739A
#2545
FedeGueli
closed
2 months ago
2
possible minor typo in lineage_notes.txt for KV.1
#2544
Mike-Honey
opened
3 months ago
1
JN.1.39+S:F456L mostly misplaced under JN.1.16 (265 seqs, 134 with S:R346T(designated JN.1.39.1), 6 with S:R346S)
#2543
aviczhl2
opened
3 months ago
13
JN.1.11 (S:V1104L) got S:R346T being caught multiple times in GBW samples (35) and further gaining S:F59L (10)
#2542
FedeGueli
opened
3 months ago
6
Update lineage_notes.txt
#2541
Memorablea
closed
2 months ago
1
JN.1.4 with N:A35T, S:K150R and S:T572I growing in England (64 as of May 21)
#2540
FedeGueli
closed
1 month ago
2
Fix KV.1 Alias
#2539
Mydtlwn
closed
3 months ago
1
JN.1.18+S:F456V misplaced as JN.1.16.1+S:L456V(109 seqs, 19 countries)
#2538
aviczhl2
closed
1 month ago
26
Update lineage_notes.txt
#2537
FedeGueli
closed
2 months ago
1
JN.1+S:A67V,N:T24I(14 seqs, 4 countries)
#2536
aviczhl2
opened
3 months ago
5
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