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dauparas
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ProteinMPNN
Code for the ProteinMPNN paper
MIT License
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Designing Interface Residues
#62
linamp
opened
1 year ago
1
What constitutes a "low quality" backbone?
#61
bwllc
opened
1 year ago
4
How to prepare input files for fine-tuning with multimers?
#60
gezmi
opened
1 year ago
1
Choosing the redesigned structure
#59
barthelemymp
opened
1 year ago
0
Error in running colab version.
#58
SnehaBheemireddy
opened
1 year ago
0
Using multiple input structures for a single sequence output
#57
acarbn
opened
1 year ago
2
Fixing cases where mutations are introduced although they do not pass the pssm_threshold
#56
LiorZ
opened
1 year ago
0
Add Dockerfile
#55
alexrejto
opened
1 year ago
1
training with a custom dataset
#54
adrienchaton
opened
1 year ago
3
question about dataset
#53
MaoSihong
opened
1 year ago
0
mmseq clustering logic
#52
OliviaViessmann
opened
1 year ago
4
Disallow --use_soluble_model if --ca_only is specified
#51
jacobastern
closed
1 year ago
1
Safety of generated sequences
#50
remybonnav
closed
1 year ago
1
OSError: [Errno 22] Invalid argument: 'inputs/*pdb' .How do fix this bug?
#49
DragonReed
closed
1 year ago
1
How many paramters are there in ProteinMPNNmodels?
#48
Huanle
closed
1 year ago
1
General Soluble Model Question
#47
SkwisgaarSkwigelf
closed
1 year ago
4
Amino acid sequence has too many "A"
#46
yikehuaili
closed
1 year ago
2
Discrepancy between paper and code on attention module
#45
MaoSihong
closed
1 year ago
0
Criteria for selecting top-ranked sequence?
#44
mlnance
closed
1 year ago
2
fixed some confusing typos
#43
oushu1zhangxiangxuan1
opened
1 year ago
0
scripts to generate PDBID_CHAINID.pt and PDBID.pt
#42
johnnyp117
closed
1 year ago
4
Example of using omit_AA?
#41
marissadolorfino
closed
1 year ago
2
Fix bug where some structures are not loaded if batch_size is too small
#40
jlaw9
opened
1 year ago
0
How to get the predicted PSSM from structure?
#39
bzhousd
closed
1 year ago
1
Pull request - ignore
#38
BobbyLangan
closed
1 year ago
0
Why sequence design takes protein sequences as inputs?
#37
yyou1996
closed
1 year ago
3
New feature: Python package
#36
brianloyal
closed
1 year ago
2
Clarification about score and global_score?
#35
ayaanhossain
closed
1 year ago
1
About the variable "order_mask_backward" in protein_mpnn_utils.py, line 1085
#34
phonez
opened
1 year ago
2
Suppress warning when using release version.
#33
roccomoretti
closed
1 year ago
1
Homooligimer while also fixing residues
#32
inthesomeday000
opened
1 year ago
1
TL pipeline development finished
#31
DENGARDEN
closed
1 year ago
0
pull request
#30
dhtmdwo
closed
1 year ago
0
O_chain_A = NaN and Global_Score=NaN
#29
Germanki
opened
1 year ago
1
parse_PDB returns shorter sequence than pdb file
#28
adrienchaton
closed
1 year ago
4
Create Slice Syntax for tied_list for make_tied_positions_dict.py
#27
zhoubay
opened
1 year ago
1
Re-training?
#26
skelow
closed
1 year ago
1
Abnormal results
#25
zdf1122
closed
1 year ago
5
How many sequences to create?
#24
jadolfbr
closed
1 year ago
3
Any way to specify per-residue AA makeups?
#23
jadolfbr
closed
1 year ago
3
Why the difficult interface to specify residues?
#22
jadolfbr
opened
1 year ago
4
processed training datasets?
#21
ndnng
closed
1 year ago
1
protein_mpnn_utils.py cleanup
#20
Seanny123
opened
1 year ago
0
What does scoring depend on?
#19
gezmi
closed
1 year ago
1
some issues about jsonl files
#18
sirius777coder
opened
1 year ago
1
Adding support for residues to design
#17
gezmi
closed
1 year ago
2
remove erroneous space when parsing for backbone oxygen atoms.
#16
benf549
closed
2 years ago
0
about ppi design
#15
18217265596
closed
1 year ago
4
Getting last layer representations of the encoder and decoder?
#14
johnnytam100
closed
1 year ago
1
Weights without adding noise during training or training code
#13
YifanDengWHU
closed
1 year ago
1
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