dbmi-pitt DIKB-Micropublication issues

dbmi-pitt / DIKB-Micropublication

Micropublication and Open Data Annotation for drug-drug interaction evidence synthesis

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issues

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precipitant and objects are incorrect (reversed) in the NP formalization

#50 rkboyce opened 4 years ago
0
Do we need to include "age" in material/data field?

#49 Louisa78909 closed 8 years ago
1
Write specs for tools to visualize what's inside of an NP dataset

#48 jodischneider opened 8 years ago
0
Register as a nanopublication server

#47 jodischneider opened 8 years ago
0
Publish data on datahub.io

#46 jodischneider opened 8 years ago
0
Create a nanopub server

#45 rkboyce opened 8 years ago
1
Register our nanopublication dataset with datahub.io

#44 rkboyce opened 8 years ago
0
problems with rdf:subClassOf mp:Data/mp:Method

#43 jodischneider closed 8 years ago
4
Do we want ALL possible materials to be annotated separately?

#42 jodischneider opened 8 years ago
1
Update rdf:datatype of OA annotations, should be a URI, not a string

#41 jodischneider closed 8 years ago
1
Find vocabulary identified as http://dbmi-icode-01.dbmi.pitt.edu/dikb/vocab/resource/ and ensure it resolves

#40 jodischneider opened 8 years ago
1
Work out the provenance for MP and NP

#39 rkboyce opened 8 years ago
3
Add MP:Argues

#38 rkboyce closed 8 years ago
3
Query review : use the evidence type at the Method not the Data

#37 ningyifan closed 8 years ago
6
Query review: STAT-03 STAT-04

#36 ningyifan closed 8 years ago
1
Query review :PK-01 PK-02

#35 ningyifan closed 8 years ago
1
Add revised MP OWL file to data directory

#34 jodischneider closed 8 years ago
0
Query review: FE-01, FE-02

#33 ningyifan closed 8 years ago
1
Add the rdfs:label to be part of each query's results

#32 ningyifan closed 8 years ago
1
Change 'assertion' to be 'claim' in the use-cases and the query variables

#31 ningyifan closed 8 years ago
2
Query review : FA-02 FA-03

#30 ningyifan closed 8 years ago
2
Ensure that all items from the old DIKB ABOUT DRUGS are in the new DIKB

#29 ningyifan closed 8 years ago
5
mp:data will need subclasses

#28 jodischneider closed 8 years ago
2
data in the graph doesn't show units of measure

#27 jodischneider opened 8 years ago
0
add mp:Reference

#26 jodischneider closed 8 years ago
5
extra insertion of owl:NamedIndividual

#25 jodischneider closed 8 years ago
1
mp:challenges and mp:supports may be reversed in the graph

#24 jodischneider closed 8 years ago
0
V1.0

#23 ningyifan closed 8 years ago
0
Revisit information needs of "act as support or rebuttal"

#22 jodischneider closed 8 years ago
1
Triage & manual review needed for "non-traceable drug label" statements from old-DIKB

#21 jodischneider opened 9 years ago
1
Write a roadmap

#20 jodischneider opened 9 years ago
0
Fix the query statement "Which evidence items are related to and follow-up on evidence item X?"

#19 jodischneider closed 8 years ago
3
resolve terminology: 'assertion' vs. 'claim'

#18 jodischneider closed 8 years ago
1
Decide how to model evidence use assumptions

#17 jodischneider opened 9 years ago
1
In vitro versus in vivo evidence

#16 samuelrosko closed 8 years ago
5
Rejected evidence - see queries/use-cases.txt

#15 samuelrosko opened 9 years ago
3
Pull request to get the new nano-pub changes to the upstream

#14 rkboyce closed 9 years ago
0
Discuss PROV ontology

#13 jodischneider closed 8 years ago
1
check that Assertions are specified by URI and not by text string

#12 jodischneider closed 8 years ago
2
Determine most appropriate choice of OpenAnnotation motivation (motivatedBy)

#11 jodischneider opened 9 years ago
1
motivatedBy

#10 jodischneider closed 9 years ago
1
Is a string expected for oa:annotatedBy?

#9 jodischneider closed 8 years ago
3
Source statements (needs manual correction)

#8 jodischneider closed 8 years ago
3
SIO_000628 vs oa:SemanticTag

#7 jodischneider closed 8 years ago
2
Represent all URIs as URIs and not strings

#6 jodischneider closed 8 years ago
1
1 mp:Material, or several mp:Material's?

#5 jodischneider closed 8 years ago
2
Claim is already a Statement

#4 jodischneider closed 8 years ago
3
Express dates in ISO 8601

#3 jodischneider closed 8 years ago
2
Check and fix PURLs

#2 jodischneider closed 8 years ago
3
use best drug identifiers

#1 jodischneider opened 9 years ago
4