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geneontology
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neo
noctua entity ontology
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Create test runner for GitHub Actions
#67
balhoff
closed
3 years ago
5
Tweak obo-uris hack to handle hash injected by OBO parser
#66
kltm
closed
3 years ago
1
Tweak obo-uris hack to handle hash injected by OBO parser.
#65
balhoff
closed
3 years ago
12
Is NEO typing PRO identifiers correctly?
#64
vanaukenk
closed
3 years ago
5
accept both gpi2 and gpi1 (untested)
#63
cmungall
closed
3 years ago
3
NEO no longer builds in the pipeline
#62
kltm
closed
3 years ago
15
consider updating wormbase expansion
#61
balhoff
opened
3 years ago
3
load curated gpi file for sars-cov-2
#60
cmungall
closed
2 years ago
7
Roll out Xenopus Anatomy Ontology (XAO) for use in Noctua
#59
kltm
closed
4 years ago
2
Remove NEO build dependency on frozen datasets.json
#58
kltm
opened
4 years ago
1
Add localId to synonyms when making NEO
#57
cmungall
closed
4 years ago
0
fixed typo
#56
cmungall
closed
4 years ago
0
adding sars-cov-2 to neo build
#55
cmungall
closed
4 years ago
0
Identify test cases for NEO (and autocomplete) builds
#54
kltm
opened
4 years ago
1
ZFIN genes created in September 2019 and later are not available in Noctua (but available in our GPI)
#53
sabrinatoro
closed
4 years ago
14
Need to check RGD identifiers in neo
#52
vanaukenk
closed
4 years ago
6
Some PR identifiers are not making it into the final (GOlr pipeline) product
#51
kltm
closed
3 years ago
12
NEO no longer seems to build
#50
kltm
closed
4 years ago
7
Load GPI file for UniProt reviewed entries for Virus and Bacteria in NEO
#49
pgaudet
closed
2 years ago
11
Create an is-a closure version of NEO for Noctua autocomplete
#48
vanaukenk
closed
5 years ago
2
develop neo-lite for use in go-lego
#47
goodb
closed
4 years ago
4
NEO may be flooded with uninteresting tRNA ids/labels from GOA
#46
kltm
opened
5 years ago
1
fix travis
#45
cmungall
closed
3 years ago
0
add biolink category
#44
cmungall
opened
5 years ago
0
Adding pseudocap and ecoli, fixes #42
#43
cmungall
closed
5 years ago
0
Add psuedocap
#42
cmungall
closed
5 years ago
0
Include life stage ontologies in neo
#41
vanaukenk
opened
5 years ago
2
Adding biolink categories
#40
cmungall
closed
5 years ago
1
Revert build-neo-makefile.py
#39
kltm
closed
5 years ago
0
Some genes not available in autocomplete, symbol and id issues
#38
vanaukenk
closed
4 years ago
14
SGD has incomplete GPI
#36
suzialeksander
closed
2 years ago
11
Load swissprot
#35
cmungall
opened
6 years ago
1
Please use http://purl.uniprot.org/uniprot or http://purl.uniprot.org/isoform/ IRIs for UniProt concepts
#34
JervenBolleman
opened
6 years ago
28
http://purl.obolibrary.org/obo/go/extensions/go-lego.owl is in manchester syntax
#33
JervenBolleman
closed
2 years ago
6
Unique Recommended Name for a GP
#32
lpalbou
closed
6 years ago
5
Metadata on Gene Product
#31
lpalbou
opened
6 years ago
0
Fix MGI
#30
cmungall
closed
6 years ago
0
Fix gramene gene product URIs
#29
cmungall
closed
6 years ago
2
Fix gene product URIs
#28
cmungall
closed
6 years ago
0
skip suspicious lines
#27
cmungall
closed
6 years ago
0
Use CHEBI information macromolecule
#26
cmungall
closed
6 years ago
1
classify all GPI entities as information macromolecules
#25
cmungall
closed
6 years ago
1
Load all of swissprot
#24
cmungall
closed
2 years ago
3
Only add an entry for "true" isoforms.
#23
cmungall
closed
7 years ago
0
IRF3 Hsap is showing up multiple times
#22
cmungall
closed
7 years ago
1
Fold neo into main pipeline
#21
cmungall
opened
7 years ago
1
Include gpi for isoforms for human too
#20
cmungall
closed
7 years ago
0
Adding xenbase
#19
cmungall
closed
7 years ago
1
NEO script fails if case is different for "name" (column 3 in gaf)
#18
elserj
opened
7 years ago
0
Get non-mouse PRO ids into Noctua for use in annotation
#105
hdrabkin
opened
7 years ago
11
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