jbloomlab dms_tools2 issues

jbloomlab / dms_tools2

software for the analysis and visualization of deep mutational scanning data

GNU General Public License v3.0

29 stars 20 forks source link

issues

Newest

Newest Most commented Recently updated Oldest Least commented Least recently updated

PIP Error when Installing dms_tools2

#72 kevinmyers opened 2 months ago
5
Unable to install DMS in conda env or Run Digens 2018 example Notebook

#71 karenHDT opened 4 months ago
2
Issues Installing dms_tools2

#70 sz1999 opened 1 year ago
1
issues installing dms_tools2

#69 dylanc-14 opened 1 year ago
2
Not possible to install

#68 anandasm opened 1 year ago
2
fixed bug parsing version of fastq-dump >= 3.0.0

#67 couteiral closed 1 year ago
1
fixed bug parsing version of fastq-dump >= 3.0.0

#66 couteiral closed 1 year ago
0
Compiling errors for newer Mac OS (Xcode commandline tools)

#65 RicardoBiol closed 2 years ago
1
weblogo plot image artifacts.

#64 adalisan closed 2 years ago
5
One sample and only 1 barcode (single-end run)?

#63 RicardoBiol closed 2 years ago
1
using regex for version parsing

#62 FlyinTeller closed 2 years ago
0
Issue with fastq-dump version string

#61 FlyinTeller closed 2 years ago
2
Problem with error conrtols

#60 gsifeng closed 2 years ago
2
unconfirmed bug in python code

#59 adalisan opened 2 years ago
1
_cutils.c asks for Python developer header files not present by default

#58 JiaGengChang closed 2 years ago
0
pin `numpy` < 1.20

#57 jbloom closed 3 years ago
0
pin `pystan` to < 3

#56 jbloom closed 3 years ago
0
`fastqFromSRA` works with newer `fastq-dump`

#55 jbloom closed 3 years ago
0
Analysis with single-Read data

#54 euphowayne78 closed 3 years ago
2
no need for max `biopython` version

#53 jbloom closed 3 years ago
0
pin `pandas`, `biopython`, and `matplotlib` to max versions to avoid errors

#52 jbloom closed 3 years ago
0
Update path to biopython IUPAC module in __init__

#51 nguyenvanessa closed 3 years ago
0
__init__.py file points to missing biopython module

#50 nguyenvanessa closed 3 years ago
3
Initial package setup results in dependency issues?

#49 jmath97 closed 3 years ago
2
Question about alignment

#48 tos2014 closed 4 years ago
6
`dms2_batch_bcsubamp` handles `bclen` of 0

#47 jbloom closed 4 years ago
0
Question about arguments (--bclen2 10 --bclen 0)

#46 tos2014 closed 4 years ago
8
Errors running examples

#45 lconde-ucl closed 4 years ago
2
fix version error with `fastq-dump`

#44 jbloom closed 4 years ago
0
fastqFromSRA error

#43 adingens closed 4 years ago
1
Added `--bcinfo_csv` argument to `dms2_bcsubamp`

#42 khdcrawford closed 4 years ago
1
Output `bcInfo` in `.csv`

#41 khdcrawford closed 4 years ago
5
added pseudocount to raw codon counts in `syn_selection_by_codon`

#40 fwelsh closed 4 years ago
4
track codoncounts / prefs for Doud2016

#39 jbloom closed 4 years ago
0
Updated CHANGELOG for `syn_selection`

#38 jbloom closed 4 years ago
0
Updated to version 2.6.2

#37 jbloom closed 4 years ago
0
Updated to version 2.6.2

#36 fwelsh closed 4 years ago
1
Updated for addition of syn_selection module

#35 fwelsh closed 4 years ago
1
adding syn_selection_by_codon module

#34 fwelsh closed 4 years ago
1
added `utils.codon_to_nt_counts`

#33 jbloom closed 4 years ago
0
Add chartype = nucleotide to dms2_bcsubamp

#32 adingens closed 4 years ago
2
make compatible with python 3.7

#31 jbloom closed 4 years ago
0
removed dependency on `HTSeq`

#30 jbloom closed 4 years ago
0
Doud2016 example, error in dms2_bcsubamp

#29 grhuynh closed 4 years ago
7
try fix test fail from inadequate `attrs` version

#28 jbloom closed 4 years ago
0
remove `barcodes.fracIdentWithinBarcode`

#27 jbloom closed 4 years ago
0
remove `neutcurve` module

#26 jbloom closed 4 years ago
0
compatible with `pandas` 0.25

#25 jbloom closed 4 years ago
0
removed `codonvarianttable`

#24 jbloom closed 4 years ago
0
parse output from newer `minimap2`

#23 jbloom closed 4 years ago
0