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matsengrp
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cft
Clonal family tree
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Installation readme edits
#262
eharkins
closed
5 years ago
0
Affinity
#261
eharkins
closed
5 years ago
0
Add alternate x/y scales
#260
metasoarous
closed
5 years ago
3
What to do with csv input file relationships
#259
metasoarous
closed
5 years ago
3
Build top 50 families if possible
#258
eharkins
closed
5 years ago
9
Get rid of checkboxes for both datasets and clonal families tables
#257
eharkins
closed
5 years ago
1
Merge in psath's fork
#256
metasoarous
closed
5 years ago
0
How to handle invalid / broken / null data
#255
eharkins
closed
5 years ago
5
Add CDR1/2 region annotations
#254
metasoarous
opened
5 years ago
0
Default naive name
#253
metasoarous
closed
5 years ago
2
Add target and script for #250 to color FastTree
#252
eharkins
closed
5 years ago
0
Add command line flag to build_olmsted_json.py for togling pretty-print
#251
metasoarous
closed
5 years ago
1
Add pruned FastTree graphic
#250
lauradoepker
closed
5 years ago
12
Editing datascript for Olmsted#17, Olmsted#11, scons for Olmsted#13
#249
eharkins
closed
5 years ago
1
Evenly spaced tree leaves using post-order traversal
#248
eharkins
closed
5 years ago
0
rename injected naive sequence
#247
psathyrella
closed
5 years ago
0
rename scons utils, update partis i/o, and sundries
#246
psathyrella
closed
5 years ago
0
Fix problem with dead alignment processes leaving empty files
#245
metasoarous
opened
6 years ago
3
Deal with empty partition-files
#244
metasoarous
closed
6 years ago
0
process_partis.py - small bug?
#243
dunleavy005
closed
6 years ago
4
Publish prune.py for BF520.1 paper
#242
lauradoepker
closed
6 years ago
3
Update README
#241
metasoarous
closed
6 years ago
1
Seed entities should not be unique per sample
#240
metasoarous
closed
6 years ago
1
Filter sequences by mutated_invariants in addition to existing health metrics
#239
metasoarous
closed
6 years ago
0
Debug build issues with large unseeded clusters failing
#238
metasoarous
closed
6 years ago
0
Tool for slicing/dicing dataset files
#237
metasoarous
closed
6 years ago
1
Build metadata lazily
#236
metasoarous
closed
6 years ago
0
Run some new data through the system
#235
metasoarous
closed
5 years ago
4
Add support for json infiles
#234
metasoarous
closed
6 years ago
0
Rework flow of --parameter-dir and --locus in process_partis.py
#233
metasoarous
closed
6 years ago
1
Repurpose process_partis.py for general use
#232
lauradoepker
closed
6 years ago
1
Build issues with laura-mb-2 data
#231
metasoarous
closed
6 years ago
1
Build and deploy latest data
#230
metasoarous
closed
5 years ago
10
215 generalize
#229
metasoarous
closed
6 years ago
1
Resolve sequence metadata exchange to cft
#228
metasoarous
closed
6 years ago
0
219 faster clustering
#227
metasoarous
closed
6 years ago
0
Fix long process_partis.py command line invocation requiring listing unique_ids
#226
metasoarous
closed
6 years ago
0
Memory problems with dendropy implementation of minadcl_clusters.py
#225
metasoarous
closed
6 years ago
4
minadcl crash bug?
#224
metasoarous
closed
6 years ago
1
219 faster clustering
#223
metasoarous
closed
6 years ago
1
Have CFT load from yaml/json spec
#222
metasoarous
closed
6 years ago
0
Produce yaml output files for cft consumption
#221
metasoarous
closed
6 years ago
7
213 unseeded
#220
metasoarous
closed
6 years ago
0
Debug slowness on minadcl_clusters.py
#219
metasoarous
closed
6 years ago
3
Fix prune.py
#218
metasoarous
closed
6 years ago
1
Solidify partis python dependency
#217
metasoarous
closed
6 years ago
2
Negotiate data exchange between datascripts and cft
#216
metasoarous
closed
6 years ago
1
Generalize CFT and CFTWeb
#215
metasoarous
closed
5 years ago
0
178 nonseeded; Fixes #178, #201, #202.
#214
metasoarous
closed
6 years ago
1
Unseeded CFT
#213
metasoarous
closed
5 years ago
0
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