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nf-core
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hic
Analysis of Chromosome Conformation Capture data (Hi-C)
https://nf-co.re/hic
MIT License
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Fix incorrect handling of --restriction_site and --ligation_site params
#153
robomics
closed
1 year ago
2
samplesheet check too stringent for header check
#152
askol-lurie
opened
1 year ago
8
Invalid pairs files generation for previous versions
#151
koushik20
closed
1 year ago
1
Using "--restriction_site" and "--ligation_site" outputs an error
#150
abhratanju
closed
1 year ago
2
Move to v2.1.0dev
#148
nservant
closed
1 year ago
2
Cannot read project manifest
#147
jtxyz16
closed
5 months ago
1
Remove usages of deprecated Channel.from method
#146
nservant
closed
1 year ago
1
[BUMP] v2.0.0
#145
nservant
closed
1 year ago
1
release 2.0.0
#144
nservant
closed
1 year ago
7
update docs
#143
nservant
closed
1 year ago
1
new DSL2 version
#142
nservant
closed
1 year ago
2
Important! Template update for nf-core/tools v2.7.2
#141
nf-core-bot
closed
1 year ago
1
Important! Template update for nf-core/tools v2.7.1
#140
nf-core-bot
closed
1 year ago
1
Validation of pipeline parameters fails for --skip_compartments
#139
ViHammer
closed
1 year ago
1
Important! Template update for nf-core/tools v2.6
#138
nf-core-bot
closed
1 year ago
1
Unexpected end of ZLIB input stream
#137
syfobfx
closed
1 year ago
1
Important! Template update for nf-core/tools v2.5.1
#136
nf-core-bot
closed
1 year ago
1
Important! Template update for nf-core/tools v2.5
#135
nf-core-bot
closed
1 year ago
1
Chromap
#134
Johnsonzcode
opened
1 year ago
0
update cooltools compartments
#133
nservant
opened
1 year ago
1
Dev
#132
nservant
closed
1 year ago
1
bowtie2 indexes lost for genomes bigger than 4Gbp when --bwt2_index is not provided
#131
oneillkza
opened
1 year ago
1
markdown_to_html.py otuput.md -o results_description.html is failing
#130
laramieparatus
closed
1 year ago
1
singularity fails to pull the hic-1.3.0 container
#129
Kevin-Brockers
opened
2 years ago
0
Pipeline failure on second read during bowtie2_end_to_end
#128
RenscoHogers
opened
2 years ago
0
Wrong restriction sites for the Arima Kit => incorrect "--digestion 'arima'" option
#127
syfobfx
closed
1 year ago
1
Important! Template update for nf-core/tools v2.4
#126
nf-core-bot
closed
1 year ago
0
`--skip_compartments` options
#125
nservant
closed
1 year ago
1
nf-core-hic DSL2 pipeline
#124
nservant
closed
2 years ago
3
Important! Template update for nf-core/tools v2.3.2
#123
nf-core-bot
closed
2 years ago
0
Important! Template update for nf-core/tools v2.3.1
#122
nf-core-bot
closed
2 years ago
1
Buffer underflow on -resume
#121
syfobfx
opened
2 years ago
0
Important! Template update for nf-core/tools v2.3
#120
nf-core-bot
closed
2 years ago
2
DSL2 implementation
#119
nservant
closed
1 year ago
1
Bioframe error
#149
jbv2
closed
1 year ago
1
perserve the qc pdf from hic pro
#118
yinshiyi
opened
2 years ago
0
TAD callers and compartement with more than one resolution
#117
Nico-FR
closed
1 year ago
2
bowtie2_end_to_end failed on 1.3.0 but worked on 1.2.2
#116
Nico-FR
closed
1 year ago
5
sample name
#115
nservant
closed
1 year ago
2
Important! Template update for nf-core/tools v2.2
#114
nf-core-bot
closed
2 years ago
1
get_valid_interaction fails with exitcode 137 with --digestion arima
#113
heuermh
opened
2 years ago
6
Minor fixes to usage docs
#112
heuermh
closed
1 year ago
4
Remove duplicates execution process error
#111
koushik20
closed
2 years ago
3
Fix bug in environment
#110
nservant
closed
2 years ago
0
conda environment error
#109
erbon7
opened
2 years ago
5
Bowtie2 end to end executing process error
#108
koushik20
closed
2 years ago
4
Important! Template update for nf-core/tools v2.1
#107
nf-core-bot
closed
2 years ago
1
Important! Template update for nf-core/tools v2.0.1
#106
nf-core-bot
closed
2 years ago
1
Important! Template update for nf-core/tools v2.0
#105
KevinMenden
closed
2 years ago
1
input sample sheets
#104
nservant
closed
1 year ago
1
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