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nolanlab
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citrus
Citrus Development Code
GNU General Public License v3.0
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What does the scaleColumns argument do in citrus.full()?
#81
bc2zb
closed
8 years ago
1
No output in sam_results
#80
bc2zb
closed
7 years ago
4
Clarify what condition 1 vs condition 2 means
#79
rbruggner
opened
9 years ago
0
running citrus
#78
nncytof
closed
9 years ago
2
Script to export features of all the clusters?
#77
siychen
closed
9 years ago
1
Cluster output files seem to be converted away from sense
#76
jtheorell
opened
9 years ago
0
Not possible to change number of cross-validation folds in UI (Mac)
#75
jtheorell
opened
9 years ago
0
No file selection box after citrus.launchUI()
#74
ever4cyth
closed
9 years ago
1
Assumption on channel names
#73
shenorr
closed
9 years ago
1
FCS3 Files Exported from FlowJo 10.0.7 are incompatible with citrus
#72
ccheste1
closed
9 years ago
9
Difficulty using multiple cores-R goes non-responsive
#71
mleipold
closed
9 years ago
14
Installation instructions-typo
#70
mleipold
closed
9 years ago
1
Use file check consistency before running Citrus UI and citrus.full.
#69
rbruggner
opened
9 years ago
0
Segfault error, "address 0x0, cause 'unknown''
#68
mleipold
closed
9 years ago
13
Supported Paired tests of association
#67
davemcilwain
opened
9 years ago
0
Refactor *columns variables to be named *marker
#66
rbruggner
opened
9 years ago
0
Including regression model in the citrus.buildEndpointModel
#65
gfragiadakis
closed
9 years ago
1
Properly set parameter names and descriptions in citrus.exportCluster
#64
rbruggner
opened
9 years ago
0
not enough application memory to run Citrus
#63
horowitzamir
closed
9 years ago
2
format issue uploading .FCS3 files?
#62
horowitzamir
closed
10 years ago
8
Citrus GUI not recognizing commands
#61
horowitzamir
closed
10 years ago
20
citrus "missing values and NaN's not allowed if 'na.rm' is FALSE" error
#60
jmarose21
closed
10 years ago
2
Check to make sure median columns are in data before running clustering if invoking citrus.full
#59
rbruggner
opened
10 years ago
0
Make graphml for cluster graph
#58
rbruggner
opened
10 years ago
0
add run-time for analysis
#57
tkras
opened
10 years ago
1
Implement simple feature pruning
#56
rbruggner
opened
10 years ago
0
Add Heuristics for cell appropriate cluster sizes / cell numbers
#55
rbruggner
opened
10 years ago
0
Notify user if no results are found
#54
rbruggner
opened
10 years ago
0
Allow comparison of percentiles other than medians
#53
cjla87
opened
10 years ago
1
Cannot assign fcs files to group
#52
cjla87
closed
10 years ago
1
Add multiparameter terms in sample grouping
#51
tkras
opened
10 years ago
0
Add glmnet support for multiclass regression
#50
rbruggner
opened
10 years ago
0
Plot all cluster median graphs in single pdf
#49
rbruggner
closed
10 years ago
1
Inform user if no FCS files are found in specified directory
#48
rbruggner
closed
10 years ago
1
Make verbose runCitrus.R for easy followup analysis
#47
rbruggner
closed
10 years ago
1
Switch "Run Citrus" radio input to action button
#46
rbruggner
closed
10 years ago
1
Rename density features to abundances
#45
rbruggner
closed
10 years ago
1
Check to ensure that new labels work in markerPlots.pdf and then commit code
#44
rbruggner
closed
10 years ago
1
scaleCols not set in correctly in GUI-generated R script and in citrus.full
#43
rbruggner
closed
10 years ago
1
Scale plot ranges for features with large dynamic range differences
#42
rbruggner
opened
10 years ago
0
Better labeling of feature plot units
#41
rbruggner
opened
10 years ago
0
Include histograms of markers that are significantly different between groups
#40
cjla87
opened
10 years ago
1
Marker plots heat map scale legend
#39
cjla87
opened
10 years ago
1
Marker plots should include expression of all markers not just clustering markers
#38
cjla87
opened
10 years ago
1
Running citrus on groups with only one fcs. file
#37
cjla87
opened
10 years ago
1
Cell threshold percentage typed in
#36
cjla87
closed
10 years ago
1
Changing the number of groups to compare
#35
cjla87
closed
10 years ago
2
"Select All", "Select None" boxes
#34
cjla87
closed
10 years ago
2
Cell counts per cluster
#33
cjla87
opened
10 years ago
1
Boxplots x-axis units
#32
cjla87
closed
10 years ago
1
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