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odelaneau
/
shapeit5
Segmented HAPlotype Estimation and Imputation Tool
https://odelaneau.github.io/shapeit5/
MIT License
61
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9
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ligate won't treat offspring as scaffolded unless parents are still in data
#108
kkellysci
opened
1 day ago
0
where to find binaries
#107
js134711
closed
2 weeks ago
1
[QUESTION] Partially phased VCF as input
#106
davidyuyuan
opened
1 month ago
0
Feature request: VCF output
#105
pettyalex
opened
1 month ago
0
about merging multiallelics
#104
vicbp1
opened
2 months ago
0
vcf_to_sparse.py location for compound het detection
#103
Naughtoncolin
opened
2 months ago
0
Can only run a few base positions on chromosome X
#102
milena-andreuzo
opened
2 months ago
3
Segmentation fault when using genetic map
#101
GenevieveKrause
closed
2 months ago
2
Bug for nonPAR chrX: heterozygous haploids in the phased output.
#100
dtaliun
opened
4 months ago
1
Phasing chromosome X is wrong when males are encoded as haploids in input VCF/BCF
#99
dtaliun
opened
4 months ago
0
AN field in the phase_common phased data is different from the AN in unphased data
#98
lessdata
opened
4 months ago
0
Segmentationfault (core dumped) in one Chromosome
#97
NattyandMinnie
closed
3 months ago
1
phase_common failing at PBWT step
#96
nmshahir
opened
4 months ago
2
feature request: Mac OS and Linux ARM64 compatibility?
#95
pettyalex
opened
4 months ago
2
illegal instruction error on phase_common_static on cow array data
#94
lholivera
opened
5 months ago
2
No SER computed
#93
bilgetbak
opened
5 months ago
0
Use a common Makefile, Build automation
#92
rwk-unil
closed
5 months ago
1
Plot phasing results
#91
michal-yoles
opened
5 months ago
1
fix contig
#90
srubinacci
closed
5 months ago
0
Cannot proceed after installation
#89
suraya01
opened
6 months ago
0
No variant found
#88
niv280
opened
6 months ago
8
illegal hardware instruction
#87
niv280
closed
6 months ago
1
Switch Program Output File
#86
AkkshayaRajesh
opened
7 months ago
0
Phasing small sample sizes
#85
sihaybo
opened
7 months ago
3
--mcmc-noinit option doesn't work
#84
ndokmai
opened
7 months ago
0
Phasing a Single-Sample VCF File on GRCh38
#83
lucianhu
closed
7 months ago
0
Phasing of small parent-offspring sample
#82
friedav
closed
7 months ago
1
Interpretation of 0|0:.
#81
hara555555
opened
8 months ago
0
RFC: Shapeit5 docker
#80
thebigcorporation
opened
8 months ago
0
Update container version to latest release tag
#79
thebigcorporation
opened
8 months ago
0
Remove committed binaries
#78
thebigcorporation
opened
8 months ago
0
Simplify makefiles
#77
thebigcorporation
opened
8 months ago
1
Crude docker fixes
#76
thebigcorporation
closed
8 months ago
1
What a shitshow
#75
thebigcorporation
closed
8 months ago
0
Recommendations for references
#74
shahnirav1005
closed
8 months ago
0
AAscore software
#73
nathanLauHKGI
closed
8 months ago
1
Working with SVs: preserve INFO/END field after phase_common
#72
dtaliun
opened
9 months ago
0
Undefined reference to curl
#71
PradnyaP02
opened
9 months ago
1
Columns for .flipsAndSwitches.txt.gz
#70
karinkumar
opened
9 months ago
1
make: *** [phase_common] Error 2
#69
PradnyaP02
closed
9 months ago
2
Port shapeit5 to MacOS on Apple Silicon using SIMDE
#68
pettyalex
opened
9 months ago
11
Docker image - Static binaries shouldn't need host libraries
#67
pettyalex
opened
10 months ago
3
SER meaurement - merge multiallelic sites first?
#66
JosephLalli
opened
10 months ago
0
file extention not recognized
#65
marlmatos
opened
10 months ago
8
phase_common: command not found
#64
aissushan
closed
10 months ago
4
Phase_ rare_static Error: 31mERROR: [0mNo variants to be phased!
#63
hangsuUNC
closed
9 months ago
3
B37 chunks
#62
BEFH
opened
11 months ago
0
fasta file format not supported
#61
suvi93
closed
10 months ago
3
Phasing with relateds as scaffold
#60
psnavais
closed
11 months ago
3
"Wrong order in your genetic map file" in concatenated genetic files
#59
chunxuan-hs
closed
11 months ago
4
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