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odelaneau
/
shapeit5
Segmented HAPlotype Estimation and Imputation Tool
https://odelaneau.github.io/shapeit5/
MIT License
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Genetic map file for T2T genome (CHM13)
#54
hangsuUNC
closed
11 months ago
2
Segmentation fault
#53
klmartinez
closed
11 months ago
2
Rare phasing error: `Assertion V.vec_full[vt]->type == VARTYPE_SCAF failed`
#52
mvvugt
opened
11 months ago
3
Silent imputation of missing variants
#51
JosephLalli
opened
11 months ago
2
How can I solve "makefile:135: recipe for target 'obj/haplotype_segment_double.o' failed"
#50
jpbreed90
opened
12 months ago
0
Phasing WES Workflow
#49
GelatinousGiant
opened
12 months ago
0
phase_common error when output provided without a correct extension
#48
freeseek
opened
12 months ago
3
Reference files
#47
Anahit19
closed
1 year ago
0
tutorials/ukb_wgs: What is qc_metrics_graphtyper_v2.7.1_qc.tab.gz ?
#46
lindenb
closed
1 year ago
0
Phase_common: AC field is needed in file
#45
AkshajD
opened
1 year ago
4
where to download liftovervcf_static?
#44
WeiCSong
closed
12 months ago
1
Rare variants with reference scaffold
#43
JosephLalli
opened
1 year ago
0
ERROR: Opening [info/target.haploid.txt]: file format not supported by HTSlib
#42
Ilaria-Pirona
closed
1 year ago
1
using phase_common_static: loosing phase with bcftools convert
#41
droeatumn
opened
1 year ago
3
ligater_initialise.cpp typo?
#40
schnabelr
opened
1 year ago
1
Does phase_common use phase sets in WGS-derived VCF files?
#39
fwplace
closed
1 year ago
1
Getting the posterior probability distribution of haplotype estimations?
#38
EmiliaCXY
closed
1 year ago
1
ERROR: Opening [NC_053450.1.vcf.gz]: unknown error
#37
selasphoruskershaw
closed
1 year ago
0
Error when trying to export graph
#36
JosephLalli
closed
1 year ago
1
UKB WGS: possible to phase per independent block instead of per chromosome?
#35
WeiCSong
opened
1 year ago
2
`[W::bcf_record_check] Bad BCF record` error when `phase_rare` indexes malformed output
#34
BEFH
opened
1 year ago
7
phase_rare_static: Assertion `!isnan(GRvar_genotypes[vr][tidx].prob)' failed.
#33
schnabelr
opened
1 year ago
14
phase_common_static:ERROR: Opening [1Z.vcf]: unknown error
#32
yangwukaidi
closed
1 year ago
3
Installation using docker
#31
yangwukaidi
opened
1 year ago
3
How are the chunking files made? Can I chunk by samples?
#30
BEFH
opened
1 year ago
4
phase_common is removing all variants
#29
williamscole
closed
10 months ago
2
Installation error in make process
#28
BIOJHK
closed
1 year ago
5
Avg phaseQ value in usage document
#27
koido
closed
1 year ago
2
Segmentation faultng... | phase_common
#26
FranjoIM
opened
1 year ago
3
Question about reproducibility
#25
koido
closed
1 year ago
2
issue with makefile for phase_common
#24
theandyb
closed
1 year ago
2
Error phasing(phase_common):AC field is needed in file
#23
jikhashkya
closed
1 year ago
4
phase_common problem.
#22
jpbreed90
opened
1 year ago
14
Issue with the start
#21
masterzhen119
closed
1 year ago
2
Assertion `GRvar_genotypes[vr][tidx].prob >= 0.0f' failed, when phasing rare alleles
#20
TanguyLallemand
opened
1 year ago
9
No rule to make target error
#19
FranjoIM
closed
1 year ago
1
Whats the source of genetic map (GRCh38)?
#18
octpus616
closed
1 year ago
2
multi-allelic sites defaults supported?
#17
octpus616
closed
1 year ago
4
How to fix 'make" problem
#16
jpbreed90
closed
1 year ago
4
Compiled static binaries of update?
#15
JosephLalli
closed
1 year ago
1
Merge from odelaneau
#14
23andme-jaredo
closed
1 year ago
1
Needs of AVX2
#13
LouisLeNezet
closed
1 year ago
2
SHAPEIT5_ligate Segmentation fault
#12
LouisLeNezet
closed
1 year ago
6
How to simulate SNP data
#11
LouisLeNezet
closed
1 year ago
0
can pedigree information be fed into SHAPEIT5?
#10
cdquinto
closed
1 year ago
2
phase_rare might be filling INFO/AC incorrectly
#9
23andme-jaredo
closed
1 year ago
4
test/test.sh :: phase_rare test missing input files
#8
EricDeveaud
closed
1 year ago
1
convert :: to build or not to build ?
#7
EricDeveaud
closed
1 year ago
2
random_shuffle() not available in C++17
#6
zyhuang
closed
1 year ago
2
phase common failed to build
#5
zyhuang
closed
1 year ago
2
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