issues
search
pierrepo
/
PBxplore
A suite of tools to explore protein structures with Protein Blocks :snake:
https://pbxplore.readthedocs.org/en/latest/
MIT License
28
stars
17
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Document the API
#81
jbarnoud
closed
8 years ago
5
[WIP] Split PBlib.py and PDBlib.py into sub-modules to improve modularization
#80
HubLot
closed
8 years ago
12
PEP8
#79
HubLot
closed
8 years ago
10
Generate weblogo images through weblogo API instead from weblogo binary
#78
HubLot
closed
8 years ago
2
[WIP] Modularization of PBstat.py
#77
HubLot
closed
8 years ago
5
Update doc for PBstat --image-format
#76
jbarnoud
closed
8 years ago
0
Rename the demos
#75
jbarnoud
closed
8 years ago
1
Allows to choose the file format of weblogos in PBstat
#74
jbarnoud
closed
8 years ago
3
Weblogos are only available in PDF format
#73
jbarnoud
closed
8 years ago
5
Improvements of PBstat and creation of regression tests
#72
HubLot
closed
8 years ago
0
Demo1 and demo2 are not explicit names
#71
jbarnoud
closed
8 years ago
2
Travis fails because MDAnalysis is not compatible with Python3.
#70
HubLot
closed
8 years ago
0
Specify versions of MDAnalysis supported
#69
HubLot
closed
8 years ago
2
MDAnalysis select_atoms() error
#68
HubLot
closed
8 years ago
3
Consider using docker to ease installation, distribution and OS compatibility
#67
jmaupetit
opened
9 years ago
6
PBclust is not compatible with most recent versions of R
#66
jbarnoud
closed
8 years ago
12
Improve PBassign modularity
#65
jbarnoud
closed
9 years ago
12
PB-k means something / hc issue
#64
alexdb27
opened
9 years ago
25
Substitution score from or to Z is 0
#63
jbarnoud
opened
9 years ago
3
Distance martix calculation may be wrong
#62
jbarnoud
closed
8 years ago
26
Check weblogo is available in PBstat.py
#61
HubLot
closed
9 years ago
2
Check the availability of Weblogo in PBstat.py
#60
HubLot
closed
9 years ago
2
PBclust ask the number of cluster when --compare is used
#59
jbarnoud
closed
9 years ago
0
Fix the command line of PBclust.py in run_demo2.sh
#58
HubLot
closed
9 years ago
1
Issue with PBclust.py in run_demo2.sh
#57
HubLot
closed
9 years ago
1
modularize PBclust
#56
jbarnoud
closed
9 years ago
4
Make travis-CI install R
#55
jbarnoud
closed
9 years ago
0
Refactor tests
#54
jbarnoud
closed
9 years ago
0
Uncomment the test for PBcount with negative shift
#53
jbarnoud
closed
9 years ago
0
Improve defintion of color scheme in PB maps
#52
pierrepo
closed
8 years ago
7
Regression tests for PBclust
#51
jbarnoud
closed
9 years ago
0
Fix python 3 compatibility of PBclust
#50
jbarnoud
closed
9 years ago
0
Make PBcount more modular
#49
jbarnoud
closed
9 years ago
0
Add regression tests for PBcount
#48
jbarnoud
closed
9 years ago
0
The `--first-issue` option of `PBcount` only accept values greater or equal to 1
#47
jbarnoud
closed
9 years ago
0
Move assignment logic to PBlib
#46
jbarnoud
closed
9 years ago
1
PBclust should not have a default number of clusters
#45
jbarnoud
closed
9 years ago
3
Fix the cleaning of outputs in test_regression
#44
jbarnoud
closed
9 years ago
0
temporary directories in test_tmp directory are not erased after tests
#43
pierrepo
closed
9 years ago
6
Reduce file size of multiconformation structures (demo2)
#42
pierrepo
closed
9 years ago
3
Reduce file redundancy in demo and test directories
#41
pierrepo
closed
9 years ago
3
Fix mixed indentations in PBcount
#40
jbarnoud
closed
9 years ago
0
Missing picture in the doc
#39
jbarnoud
closed
9 years ago
0
Make displayed and run command consistent in demo 1
#38
jbarnoud
closed
9 years ago
0
Probleme with run_demo1.sh
#37
sleonard0386
closed
9 years ago
2
Replace residue-shift by first residue in the doc
#36
jbarnoud
closed
9 years ago
0
Remove the tested architectures from the README
#35
jbarnoud
closed
9 years ago
1
Update the URL to weblogo in the README
#34
jbarnoud
closed
9 years ago
0
Fix issue with weblogo and large counts
#33
jbarnoud
closed
9 years ago
0
Pull xtc
#32
jbarnoud
closed
9 years ago
0
Previous
Next