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saeyslab
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napari-sparrow
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SC-37 fix version spatial-image
#154
ArneDefauw
closed
9 months ago
0
SC_34 bug tiling correction
#153
ArneDefauw
closed
10 months ago
0
Sc 33 region props
#152
ArneDefauw
closed
10 months ago
0
Add functionality for specifying channel names when saving to spatialdata Zarr
#151
SilverViking
closed
9 months ago
0
tiling_correction "Reweighting did not converge" error
#150
sttimmer
closed
10 months ago
2
Sc 32 mesmer
#149
ArneDefauw
closed
10 months ago
0
Sc 32 mesmer
#148
ArneDefauw
closed
10 months ago
0
Sc 32 mesmer
#147
ArneDefauw
closed
10 months ago
0
AttributeError: module 'ml_dtypes' has no attribute 'float8_e4m3b11'
#146
Lucas-Maciel
closed
6 months ago
1
SC_31 docs
#145
ArneDefauw
closed
10 months ago
0
SC_30 crd issue plugin
#144
ArneDefauw
closed
10 months ago
0
Sc 29 multiscale plugin
#143
ArneDefauw
closed
10 months ago
0
SC_28 update filter shapes
#142
ArneDefauw
closed
10 months ago
0
SC_27 create sdata multi channel mem efficient
#141
ArneDefauw
closed
10 months ago
0
Sc 26 multiscale
#140
ArneDefauw
closed
10 months ago
0
SC_25 support for mac gpu + crop support apply
#139
ArneDefauw
closed
10 months ago
0
SC_24 add apply function
#138
ArneDefauw
closed
10 months ago
0
Sc 22 segmentation issue
#137
ArneDefauw
closed
10 months ago
0
Sc 21 consisten api layers
#136
ArneDefauw
closed
11 months ago
0
SC_20 fix chunk issue transcripts + upgrade packag
#135
ArneDefauw
closed
11 months ago
0
pandas version 2.1.0
#134
ArneDefauw
closed
8 months ago
2
Installation problems solved
#133
WoutVanhenden
closed
10 months ago
4
Sc 19 GitHub actions
#132
ArneDefauw
closed
11 months ago
0
Issues with installation of packages
#131
lopollar
closed
11 months ago
3
Calculate average pixel brightness per segmented object
#130
lopollar
opened
12 months ago
3
add the option to plot filtered out cells to main
#129
lopollar
closed
9 months ago
2
Segmentation parameter min_size (for discarding small fragments) has no effect
#128
SilverViking
opened
1 year ago
1
Problem reading SpatialData on Windows
#127
julienmortier
closed
1 year ago
2
problems with contrast enhancing
#126
lopollar
closed
1 year ago
1
Possibility to add multiple Field of Views to one sdata object
#125
lopollar
opened
1 year ago
0
Splitup functions
#124
SilverViking
closed
1 year ago
0
Add minimum number of counts per cell and minimum number of cells per gene to napari UI
#123
julienmortier
closed
1 year ago
2
Split napari-sparrow into sparrow (pipeline only) and napari-sparrow (plugin only)?
#122
SilverViking
closed
1 month ago
1
Refactor functions.py
#121
SilverViking
closed
9 months ago
1
Document code using docstrings
#120
SilverViking
closed
1 month ago
0
Clean up debug and logging messages
#119
SilverViking
closed
12 months ago
2
Testing of output for the different plots
#118
SilverViking
opened
1 year ago
0
fix counts column in points layer plus allocation
#117
lopollar
opened
1 year ago
0
Clean up experiments
#116
lopollar
opened
1 year ago
0
Add filtered cells
#115
lopollar
closed
1 year ago
0
create_voronoi_boundaries() throws TopologyException
#114
SilverViking
closed
1 month ago
2
Tiling correction when image size is not multiple of tile size
#113
ArneDefauw
closed
1 year ago
2
Find oud why overwriting is so slow
#112
lopollar
closed
1 year ago
1
take into account subset when analyzing genes filtered out
#111
lopollar
closed
1 year ago
3
make it possible to load in subset
#110
lopollar
closed
1 year ago
2
Code for Sankey plots
#109
lopollar
closed
1 year ago
1
plot shapes of filtered out cells
#108
lopollar
closed
1 year ago
1
fix the plot_control transcripts for large images
#107
lopollar
opened
1 year ago
2
Output how many transcripts are used
#106
lopollar
opened
1 year ago
1
adapt tilingCorrection plot
#105
lopollar
closed
1 year ago
1
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