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sanger-pathogens
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Roary
Rapid large-scale prokaryote pan genome analysis
http://sanger-pathogens.github.io/Roary
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Annotation of protein clusters in roary?
#571
gapabh
opened
2 years ago
0
core_gene_alignment.newick
#570
valery-shap
closed
1 year ago
1
roary : Depends: r-cran-ggplot2 but it is not going to be installed E: Unable to correct problems, you have held broken packages.
#569
neelam19051
opened
2 years ago
4
MSG: Got a sequence without letters. Could not guess alphabet
#568
dhiru16
opened
2 years ago
2
Using Galaxy for Roary
#567
Jennifer-1991
closed
2 years ago
1
Fix create_pan_genome_plots.R script
#566
gallardoalba
closed
2 years ago
3
how to extract the sequence of core gene or accessory gene after running roary
#565
cylcheyanlin
opened
2 years ago
2
_clustered.clstr file does not exist, cannot be read
#564
Haley-Wami
opened
2 years ago
2
Can't open file: IS12-12674_pk.gff.proteome.faa(roary).
#563
angeladelvalle
opened
2 years ago
0
roary and cd-hit
#562
zhichusun
opened
2 years ago
1
Bio::Roary::CommandLine::Roary module not installed
#561
cylcheyanlin
opened
2 years ago
1
Creating gene presence/absence of novel query against existing dataset
#560
annabelledamerum
opened
2 years ago
0
How to calculate Heaps Alpha value from the roary pangenome analysis ?
#559
dineshkumarsrk
opened
2 years ago
3
Roary Unable to Install on Remote Linux Server with SLURM manager
#558
callaband
closed
2 years ago
4
Roary plot takes a long time to run
#557
matnguyen
opened
2 years ago
0
Roary running error
#556
sekhwal
opened
2 years ago
2
Install macOS Monterey (M1, arm64)
#555
ONeillMB1
opened
2 years ago
0
Why no core-genes?
#554
jpinus
opened
2 years ago
1
When I am using query_pan_genome -a difference --input_set_one Sample1.gff, Sample2.gff--input_set_two Sample3.gff, Sample4.gff some genes in the set_difference_unique_set_one_statistics file are not really unique. I found genes supposedly Unique for Sample1 in Sample4 too. Is there something I am missing.
#553
pkokate18
opened
2 years ago
0
number_of_conserved_genes_r.tab
#552
aparajuli12
opened
2 years ago
0
How to choose right blastp minimum precent indentity and mcl inflation value?
#551
AmayAgrawal
opened
2 years ago
1
Install hanging
#550
peflanag
opened
2 years ago
4
Running Roary in rootless docker - Roary can't access files
#549
Mike1359
opened
2 years ago
0
Gene present in Prokka but absent in Roary
#548
nikolomics
opened
2 years ago
3
docker run command
#547
ryao-mdanderson
opened
2 years ago
1
Roary analysis - core/pan genome
#546
nanzhen102
opened
2 years ago
0
NCBI annotated sequence use as input of Roary
#545
manoj044
opened
2 years ago
1
Installation error, cd-hit version, cant open file while Combine proteins into a single file
#544
carolynzy
opened
2 years ago
3
Blast percentage identity
#543
Virome1
closed
2 years ago
0
Core genome alignment failure
#542
Steven-Kemp
opened
2 years ago
1
Core genome command not running
#541
Ujjwal-Madaan
opened
2 years ago
0
Why 100 identity sequence are different groups?
#540
zckoo007
opened
2 years ago
0
Cant open file: _clustered.clstr
#539
EricDeveaud
opened
2 years ago
3
SyntaxError: invalid syntax
#538
TC-2021
opened
3 years ago
1
Distance accessory binary genes
#537
EllistonV
opened
3 years ago
0
Error: Cant access file -a
#536
ZhangDengwei
opened
3 years ago
2
Output Data Without Annotation
#535
ThomasPuttingGenomesTogether
opened
3 years ago
0
missing results in the roary outputs
#534
shafi-OZ
opened
3 years ago
2
Interpreting of roary output (pangenome frequence)
#533
vappiah
opened
3 years ago
0
Geneious generated .gff files not compatible with Roary !!
#532
Diksharma
opened
3 years ago
0
roary_plots.py download/clone
#531
sharbie88
closed
3 years ago
0
can't open roary_plots
#530
sharbie88
closed
3 years ago
0
cd-hit version not being recognised
#529
sharbie88
opened
3 years ago
0
Analysis using refseq complete genome sequence
#528
frulhuq
opened
3 years ago
1
Unable to run roary.plots
#527
EllistonV
opened
3 years ago
1
No sequence data in core_gene_alignment.aln
#526
haruosuz
closed
3 years ago
1
how to load roary data into panx
#525
taffners
opened
3 years ago
1
query coverage
#524
jainv45
opened
3 years ago
0
Unique genes issue
#523
Sirbius
opened
3 years ago
3
Core gene file missing
#522
weishwu
opened
3 years ago
0
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