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schnitzer-lab
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EXTRACT-public
EXTRACT is a tractable and robust automated cell extraction tool for calcium imaging, which extracts the activities of cells as time series from both one-photon and two-photon calcium imaging movies.
MIT License
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Patch 1
#57
vijayiyer05
opened
1 week ago
5
Restore (inadvertently removed) sample data for tutorials
#56
vijayiyer05
closed
1 week ago
0
Update to spaceless file path for the lecture tutorials
#55
vijayiyer05
closed
1 month ago
0
Update README.md
#54
vijayiyer05
closed
1 month ago
3
Update README.md for views
#53
stevevanhooser
closed
3 months ago
3
small updates to tutorials
#52
stevevanhooser
closed
3 months ago
0
July 2024 polish - this is a draft request for study
#51
stevevanhooser
closed
3 months ago
5
Usability changes
#50
fatihdinc
closed
4 months ago
0
Option to skip cell removal during EXTRACT
#49
bahanonu
opened
5 months ago
1
Edge artifacts when using partitions
#48
dimokaramanlis
opened
9 months ago
2
More tutorials
#47
stevevanhooser
closed
8 months ago
2
Update README.md
#46
stevevanhooser
closed
8 months ago
1
Link to Matlab Livescript viewer broken
#45
stevevanhooser
opened
11 months ago
0
updating newcomer Live Script to show visualization
#44
stevewds
closed
1 year ago
1
Request: create version 1.0.2
#43
stevewds
closed
1 year ago
1
Update README.md
#42
stevewds
closed
1 year ago
0
Stevewds matlabtoolboxupdates 1
#41
stevewds
closed
1 year ago
5
Final tests
#40
fatihdinc
closed
1 year ago
0
Extractor function does not use user specified parameters
#39
abahle
opened
1 year ago
2
sudden change in baseline/variance for individual footprints at file stitch boundaries
#38
abahle
closed
1 year ago
8
suddent
#37
abahle
closed
1 year ago
0
Tutorial additions
#36
fatihdinc
closed
1 year ago
0
Easier parsing of `compact_output` for cell refinement
#35
bahanonu
opened
1 year ago
3
`graphconncomp` issue in Matlab 2022b
#34
bahanonu
closed
1 year ago
2
Update get_defaults.m
#33
fatihdinc
closed
1 year ago
0
inconsistencies b/w docs and code
#32
sg-s
closed
1 year ago
1
refactored get_defaults and fixed some typos in readme
#31
sg-s
closed
1 year ago
3
[general help on improving cell extraction]
#30
sg-s
closed
1 year ago
3
Tutorial additions
#29
fatihdinc
closed
1 year ago
0
allows extract to work in a reduce MATLAB environment without some req toolboxes
#28
sg-s
closed
1 year ago
4
[missing] example.mat
#27
sg-s
closed
1 year ago
0
will it be possible to use this without extra toolboxes?
#26
sg-s
opened
1 year ago
2
Tutorial additions
#25
fatihdinc
closed
2 years ago
0
Tutorial additions
#24
fatihdinc
closed
2 years ago
0
EXTRACT throws an error if avg_cell_radius is empty or a string
#23
bahanonu
closed
2 years ago
1
Losing cells after a few iterations
#22
yrleftbrain
closed
2 years ago
6
"Incorrect dimensions for matrix multiplication." Error
#21
kimtonyhyun
closed
2 years ago
12
Error loading certain HDF5 dataset names
#20
bahanonu
closed
2 years ago
1
Motion correct+learning materials
#19
fatihdinc
closed
2 years ago
0
Towards v1
#18
fatihdinc
closed
2 years ago
0
minor stylistic changes to NWB write tutorial
#17
cechava
closed
2 years ago
0
tutorial to write output from EXTRACT pipeline to NWB files
#16
cechava
closed
2 years ago
1
empty array interpreted as 'auto' option for downsample_time_by and downsample_space_by
#15
cechava
closed
2 years ago
2
using empty array as 'auto' option for downsample_time_by and downsample_space_by
#14
cechava
closed
2 years ago
0
tutorial for reading in NWB files into EXTRACT pipeline
#13
cechava
closed
3 years ago
1
V0.8 updates
#12
fatihdinc
closed
3 years ago
0
Update extractor.m
#11
fatihdinc
closed
3 years ago
0
Loading HDF5 files
#10
milesOIST
closed
2 years ago
1
Different results using CPU and GPU
#9
milesOIST
closed
2 years ago
1
Cell check fixes
#8
fatihdinc
closed
3 years ago
0
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