issues
search
smith-chem-wisc
/
Spritz
Software for RNA-Seq analysis to create sample-specific proteoform databases from RNA-Seq data
https://smith-chem-wisc.github.io/Spritz/
MIT License
7
stars
11
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
Use other delimiter for combining accessions, etc
#192
acesnik
opened
3 years ago
0
Add support for single-end reads
#191
acesnik
closed
3 years ago
1
Possible to obtain the SnpEff version used in Spritz?
#190
finnbenned
closed
3 years ago
6
Autoupdaterfix
#189
acesnik
closed
4 years ago
0
Installer fix
#188
acesnik
closed
4 years ago
0
Add Installer, Stability Improvements for GUI, Use Speedier Tools
#187
acesnik
closed
4 years ago
0
Implement variant finding for species without reference VCF
#186
acesnik
opened
4 years ago
0
Generating proteogenomic database for Pseudomonas with VCF called from WGS (or exome seq) data
#185
animesh
opened
4 years ago
6
remove maven and add unzip
#184
acesnik
closed
4 years ago
0
Simplify custom SnpEff installation
#183
acesnik
closed
4 years ago
0
Installer, stability improvements, speedup
#182
acesnik
closed
4 years ago
0
Error running workflow
#181
finnbenned
closed
4 years ago
11
Error running Spritz workflow (solved)
#180
MiguelCos
closed
3 years ago
6
Improvements to output monitoring
#179
acesnik
closed
4 years ago
0
Images for wiki
#178
acesnik
closed
4 years ago
15
change to using http for downloads
#177
acesnik
closed
4 years ago
0
Fix #2 for fastqs
#176
acesnik
closed
4 years ago
0
simplify vcf cleanup
#175
acesnik
closed
4 years ago
0
add icon and stop container after run
#174
acesnik
closed
4 years ago
0
snpeff issue and other bugs
#173
bintiibrahim
closed
4 years ago
0
Fix SnpEff build in Docker container
#172
acesnik
closed
4 years ago
2
Update genomes.csv for Ensembl versions 98 and 99
#171
acesnik
opened
4 years ago
0
Use multiqc to summarize FASTQC results
#170
acesnik
closed
4 years ago
1
Organism Annotation Bug Fix
#169
rmmiller22
closed
4 years ago
0
fixed some bugs when merged conflicts
#168
bintiibrahim
closed
4 years ago
2
typos in docheck
#167
bintiibrahim
closed
4 years ago
0
add dockerfile and edited fusion and quant
#166
bintiibrahim
closed
4 years ago
1
clean up the C# code
#165
acesnik
closed
4 years ago
5
Should we check for different codon tables in SnpEff when choosing a nonhuman species?
#164
acesnik
opened
4 years ago
0
Need to allow for multiple species in download_uniprot_xml.py
#163
acesnik
closed
4 years ago
1
Species
#162
acesnik
closed
4 years ago
0
Add SpritzSnake
#161
acesnik
closed
4 years ago
0
latest spritz gui and snakemake
#160
bintiibrahim
closed
4 years ago
6
snakemake rewrite
#159
acesnik
closed
4 years ago
0
Could not find file common_all_20170710GRCh38.vcf
#158
animesh
closed
4 years ago
35
spritz/snakemake GUI
#157
bintiibrahim
closed
5 years ago
2
Dependencies are wrong image type after changing to netstandard2.0
#156
acesnik
closed
5 years ago
0
fix tzdata hang in build; bx-python fail
#155
acesnik
closed
5 years ago
0
Dockerize it
#154
acesnik
closed
5 years ago
0
Implement quantification at the end of the lncRNA discovery workflow
#153
acesnik
closed
4 years ago
1
Warn user that a UniProt XML makes the SampleSpecificDatabaseFlow more useful before saving
#152
acesnik
closed
4 years ago
0
Killing GUI should kill CMD process being run by EverythingRunner
#151
acesnik
closed
4 years ago
1
Remove Bio.VCF
#150
acesnik
closed
4 years ago
0
TOML naming and save location
#149
acesnik
closed
4 years ago
1
Use ORF finding for coding sequence discovery
#148
acesnik
closed
4 years ago
1
Track down inefficiency in database parsimony within MetaMorpheus...
#147
acesnik
closed
4 years ago
3
Get mzLib AppVeyor build working again if possible
#146
acesnik
closed
5 years ago
0
Implement Mutect2 in the variant calling pipeline for calling somatic and germline mutations
#145
acesnik
opened
5 years ago
2
don't download with download command, but just let it do it itself an…
#144
acesnik
closed
5 years ago
0
fetch databases before snpeff from reference
#143
acesnik
closed
5 years ago
0
Previous
Next