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stefpeschel
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NetCoMi
Network construction, analysis, and comparison for microbial compositional data
GNU General Public License v3.0
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fdrtool error during diffnet
#129
Siupek
opened
1 week ago
0
Highlighting specific hubs in the graph
#128
Lucifer1814
opened
1 month ago
0
Comparing more than two groups of samples in NetCoMi
#127
fredoowarren
opened
1 month ago
0
Adding a CITATION.cff file with the article information to help software citation
#126
sayalaruano
opened
1 month ago
0
How to easily understand the GCM heatmap
#125
Ivy-ops
opened
2 months ago
0
Issue with node size and netCompare
#124
alexmsalmeida
opened
3 months ago
5
Understanding netConstruct() output
#123
wfgui
opened
3 months ago
1
including correlations with environmental or experimental variables?
#122
danchurch
closed
3 months ago
3
Problem with the targets IDs in export to gephi
#121
JEALabmio
closed
1 month ago
4
Could I manually modify the color of each node?
#120
ChihYingLu
closed
4 months ago
2
edges dont color correctly with negative correlations
#119
gastronaut82
closed
4 months ago
2
Error in NetConstruct for network comparison : "subscript out of bounds"
#118
sarahkosh
opened
5 months ago
4
Looking for guidance on MANs Inference with samples from different metagenomics/metatranscriptomics studies
#117
sayalaruano
opened
5 months ago
4
calculate the betweenness centrality as hubs
#116
Wensi13579
closed
5 months ago
2
Cross domain interactions
#115
TeeratatK
closed
5 months ago
3
Will this package works for all lineage levels?
#114
shibormi
closed
6 months ago
0
Labelling only certain taxa of interest
#113
devarajarun
closed
6 months ago
1
Error in length of dimnames after permutation testing
#112
joshqsumner
closed
7 months ago
1
RNA-seq data(Plant)
#111
zjDzlll
closed
6 months ago
1
How to find a "good" algorithm and parameter set
#110
antonkratz
closed
8 months ago
1
Problems while installing the NetCoMi
#109
Ilaria-Pirona
closed
8 months ago
1
stability values using spieceasi
#108
lixiaopi1985
closed
6 months ago
1
Colored by phylum
#107
estebannieto93
closed
8 months ago
2
output format for Gephi visualization
#106
ladywaspzhu
closed
6 months ago
2
How to look at sub-clusters?
#105
bridgeto
closed
6 months ago
1
Edges with correlation value == -1 are not displayed in signed mode
#104
danpal96
closed
9 months ago
4
Plotting with different line style
#103
indrikwijaya
closed
9 months ago
2
Calculating the Withing module degree (Z) and participation coefficient (P) values
#102
drbmanna
closed
10 months ago
2
Change edge width range
#101
danpal96
closed
9 months ago
2
Filtering before running Netcomi
#100
Anaskou
closed
10 months ago
1
saving a plot
#99
hyoj-seo
closed
10 months ago
1
problems with arm64 build
#98
ep142
opened
10 months ago
4
ccrepe filter based on p-values
#97
indrikwijaya
closed
10 months ago
2
Association matrices when comparing networks
#96
gastronaut82
closed
10 months ago
1
SPRING network with no edges - "The data does not contain zeros" warning
#95
sayalaruano
closed
10 months ago
5
nodeshape according to sample type
#94
chrissy005
closed
10 months ago
1
Error in .checkArgsPlotHeat(argsIn) : "mat" must be a numeric matrix
#93
Dirrrrty
closed
11 months ago
2
Change node shape according to taxonomy
#92
nicolereynolds2
closed
11 months ago
1
rename labels node
#91
ZiliaMR
closed
11 months ago
2
Networks with multiple conditions
#90
andressamv
closed
1 year ago
1
Multithreading not working
#89
bioInfoGirl
closed
11 months ago
1
Sequences on the network plot instead of taxa
#88
MicrobEva
closed
1 year ago
3
Problem to install NetCoMi
#87
Fla1487
opened
1 year ago
18
Compare two conditions in one network
#86
linux51
closed
1 year ago
2
In a few cases, class assignment by DISCORDANT seems to contradict the associations from the two input networks
#85
antonkratz
closed
1 year ago
6
How to interpret SPRING correlation values?
#84
antonkratz
closed
1 year ago
1
could not find function "renameTaxa"
#83
JBL05
closed
1 year ago
2
problems about installation
#82
TSH1993
closed
1 year ago
1
freeze on permutation test (differential network analysis)
#81
katerinka-arh
closed
1 year ago
5
Adjusting parameters for cclasso in NetConstruct()
#80
SMBKrause
closed
1 year ago
2
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