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support external analysis runs in ecdp
#671
GoogleCodeExporter
closed
8 years ago
2
make seqDB work on hpc-laird
#670
GoogleCodeExporter
opened
8 years ago
1
final tcga merges
#669
GoogleCodeExporter
closed
8 years ago
2
rerun C1LBAACXX_6_NIC1254A110
#668
GoogleCodeExporter
closed
8 years ago
2
rerun C1LBAACXX_6_NIC1254A75
#667
GoogleCodeExporter
closed
8 years ago
1
Replace null values In calculated metrics
#666
GoogleCodeExporter
closed
8 years ago
2
Remove qc_failed values from all formulas and make it a separate metric
#665
GoogleCodeExporter
closed
8 years ago
2
Changes to metric list (moving metrics between categories and views)
#664
GoogleCodeExporter
closed
8 years ago
2
fix contam + nocontam
#663
GoogleCodeExporter
closed
8 years ago
2
move away from flagstat
#662
GoogleCodeExporter
closed
8 years ago
2
gastorage2 clean up
#661
GoogleCodeExporter
closed
8 years ago
1
Base distro by cycle/qual histogram problem
#660
GoogleCodeExporter
opened
8 years ago
2
move away from derived columns in java code queries, instead use views
#659
GoogleCodeExporter
closed
8 years ago
3
change rnaseq metrics to pct (ie 0.34 -> 34%)
#658
GoogleCodeExporter
closed
8 years ago
1
create ecdp demo app with publicly viewable data
#657
GoogleCodeExporter
closed
8 years ago
5
rename rnaseq metrics from pct to proportion
#656
GoogleCodeExporter
closed
8 years ago
1
dead metrics that are never used
#655
GoogleCodeExporter
closed
8 years ago
3
NUmber of Alignments metric may be wrong
#654
GoogleCodeExporter
closed
8 years ago
5
change workflow to calc picard aln metrics on mdups
#653
GoogleCodeExporter
closed
8 years ago
2
nocontamseqs
#652
GoogleCodeExporter
closed
8 years ago
4
calculate reads in exon to reads not (use cpgcov as base)
#651
GoogleCodeExporter
closed
8 years ago
4
gatk walker to count reads with NH=1
#650
GoogleCodeExporter
closed
8 years ago
1
use picard to report #aln
#649
GoogleCodeExporter
closed
8 years ago
6
figure out why tophat includes so many seconday reads
#648
GoogleCodeExporter
closed
8 years ago
3
better submission of workflows to pbs
#647
GoogleCodeExporter
closed
8 years ago
3
ECDP not displaying dated runs
#646
GoogleCodeExporter
closed
8 years ago
5
phiX contam metrics in ECDP interface
#645
GoogleCodeExporter
closed
8 years ago
1
upload rose lai to hpcc account
#644
GoogleCodeExporter
closed
8 years ago
2
bulk conversion from download links to hpcc paths in ecdp
#643
GoogleCodeExporter
closed
8 years ago
1
clicking download files button from sample context menu should open a download tab with files for ALL selected samples
#642
GoogleCodeExporter
opened
8 years ago
2
How to do complex searches in ecdp (AND OR NOT)
#641
GoogleCodeExporter
closed
8 years ago
3
duplicate wig files (winsize30dumpv BinDepths wig) listed in file downloads
#640
GoogleCodeExporter
closed
8 years ago
3
make sure JSON is never rendered in ECDP tables
#639
GoogleCodeExporter
opened
8 years ago
1
delete columns from multi-sample view in ECDP
#638
GoogleCodeExporter
opened
8 years ago
1
Clean up storage on uec-gs1
#637
GoogleCodeExporter
closed
8 years ago
2
ECDP being weird
#636
GoogleCodeExporter
closed
8 years ago
5
alert via email when seqDB database does not build correctly
#635
GoogleCodeExporter
closed
8 years ago
4
email users following apperance of results
#634
GoogleCodeExporter
opened
8 years ago
0
Distribute jobs to available 16 core nodes nodes
#633
GoogleCodeExporter
closed
8 years ago
1
Files not showing in ECDP
#632
GoogleCodeExporter
closed
8 years ago
4
create tool to resubmit a subset of jobs from an existing already-run workflow
#631
GoogleCodeExporter
closed
8 years ago
2
update ssl keys
#630
GoogleCodeExporter
closed
8 years ago
1
cghub queries for tcga Bis samples
#629
GoogleCodeExporter
closed
8 years ago
1
rerun canceled bissnp jobs for C33YCACXX
#628
GoogleCodeExporter
closed
8 years ago
1
downloads were not working on eccpgxt.
#627
GoogleCodeExporter
closed
8 years ago
0
add variant calling pipeline
#626
GoogleCodeExporter
closed
8 years ago
3
port uecgatk to latest gatk
#625
GoogleCodeExporter
closed
8 years ago
1
Files don't donwload but they show up
#624
GoogleCodeExporter
closed
8 years ago
3
migrate all sourceforge repos to github
#623
GoogleCodeExporter
closed
8 years ago
1
make LibType searchable with Sample Search field
#622
GoogleCodeExporter
closed
8 years ago
2
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