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This is applied to Differential Expression results, but you can still see how the scores are calculated
```
# Plot STRING networks using only DEGs and coloring by fold change
plotStringDE lfc]
…
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**Is your feature request related to a problem? Please describe.**
For the RDF model, I intend to model PPIs from StringDB as `:has_participant :some protein` for each involved protein.
**Describe…
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* stringdb version:
* Python version:
* Operating System:
### Description
Hi,
Thanks for the package. I'm trying to use get_network() and get_interaction_partners() with and without other …
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hay sir. i have struct like this
`
type EmployeAccount struct {
Id int64 `json:"idEmploye"`
Username string `json:"username"`
Password string `json:"password"`
Email string `json:"email…
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for the inheritance tools and/or `gemini query`, a user could specify:
`--genes genes-of-interest.txt --radius 2 --network stringdb.txt`
and we could automatically limit to all genes within a distan…
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Here, I report the heatmap for Top similarity and top anti-similarity pairs without known evidence behind it.
Procedure:
1. Select top 20 similar pairs according to ORF profiles cosine similarity …
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**Use case 11: Related Proteins/Metabolites across DCCs**
>Few steps did not work for this workflow, e.g., - Mano
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> Reformat and graph plot of StringDB PPI didn’t display or took long time.…
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Hi,
I tried "compute_crosstalk" using stringdb, everything seemed OK, but when I used biogrid, the result looked weired, all the values are zero:
![image](https://github.com/DavisWeaver/crosstalkr/a…
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Thanks in part to @mellybelly @kltm @lwinfree and all the reusable data team, StringDB is now all cc-by, so we can pull a lot more data. Currently we are only ingesting the protein.links.detailed fil…
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> I got stuck on building the database-
>
> File "util/build_sql_stringdb_database.py", line 5, in
> ModuleNotFoundError: No module named 'sql'
Which version of sql should be installed?